PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG005120.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 383aa MW: 44045.8 Da PI: 7.602

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG005120.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3.2e-06	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F+ + +Lk+H+++H TRIDC6AG005120.3 70 HTCEECGACFRKPAHLKQHMQSH 92 79*******************99 PP
2	zf-C2H2	22	4.2e-07	98	122	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s+ rk++L+rH+ tH TRIDC6AG005120.3 98 FACPleDCPFSYIRKDHLNRHMLTH 122 78**********************9 PP
3	zf-C2H2	17.1	1.6e-05	127	152	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp Cgk+Fs k n +rH + H TRIDC6AG005120.3 127 FTCPleGCGKRFSIKANIQRHVKEmH 152 89********************9988 PP
4	zf-C2H2	16.7	2.1e-05	171	193	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ C+k F+ +s+Lk+H +H TRIDC6AG005120.3 171 CQeeGCKKAFKYPSQLKKHEESH 193 77779**************9988 PP
5	zf-C2H2	16.6	2.3e-05	260	284	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL++H++ H TRIDC6AG005120.3 260 KCSfdGCECSFSTKSNLNKHMKAcH 284 799999****************955 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MSSGDGIDGD EKSEETHGKD IRRIKCEFCT VVRSKMYLIR AHMVAQHKDE LDASEIYDSN 60 GEKVVYGVGH TCEECGACFR KPAHLKQHMQ SHSKERSFAC PLEDCPFSYI RKDHLNRHML 120 THEGKLFTCP LEGCGKRFSI KANIQRHVKE MHEDEHECKM DDTKSNQQVI CQEEGCKKAF 180 KYPSQLKKHE ESHAKLDYVE VVCCEPGCLK TFTNAKCLRA HNQSCHLYTH CDICGEKHLR 240 KNIKRHLRAH DEVHSTERLK CSFDGCECSF STKSNLNKHM KACHDQVRPF ECRVAGCGKT 300 FPYKHVRDNH EKSSCHVYVE GDYEEMDEQL RSRRGGGRKR SAVTVETLTR KRVTIPSEVS 360 LLDDGAEYMR WMLSDGDGSN HAE

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MSSGDGIDGD EKSEETHGKD IRRIKCEFCT VVRSKMYLIR AHMVAQHKDE LDASEIYDSN  60
GEKVVYGVGH TCEECGACFR KPAHLKQHMQ SHSKERSFAC PLEDCPFSYI RKDHLNRHML  120
THEGKLFTCP LEGCGKRFSI KANIQRHVKE MHEDEHECKM DDTKSNQQVI CQEEGCKKAF  180
KYPSQLKKHE ESHAKLDYVE VVCCEPGCLK TFTNAKCLRA HNQSCHLYTH CDICGEKHLR  240
KNIKRHLRAH DEVHSTERLK CSFDGCECSF STKSNLNKHM KACHDQVRPF ECRVAGCGKT  300
FPYKHVRDNH EKSSCHVYVE GDYEEMDEQL RSRRGGGRKR SAVTVETLTR KRVTIPSEVS  360
LLDDGAEYMR WMLSDGDGSN HAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-120	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG005120.3