PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5BG081750.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 260aa MW: 27304.8 Da PI: 10.73

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG081750.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	27.3	7.4e-09	167	245	20	98
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++P+ar++ +++ + + ea l+ ka elf+ ++ + +a + +++++ ++++av + + ++fl d vp TRIDC5BG081750.1 167 SFPMARVRLLMRDKDATIRSNNEAVFLVNKASELFLEVFAKDAHQNALKERKKSITYENLSSAVCNEKRYKFLSDFVPL 245 79*****9997777777889999******98888899999999*************************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
GEAAEPGSGS GKQEPSGEAG KPKPTPKKTK QQASDGAAKE TPSKRKRDDA GEPQPQKAAK 60 KADKATPTKK KQASSGGAEK ATTPSKTPQK EAKSAKKSPG KAEKATPTKK QQASGGAEKA 120 TPSKRKHGDL ESPNAAKSGQ NGSSPAKKQK GKAAGATPVA AEPGTCSFPM ARVRLLMRDK 180 DATIRSNNEA VFLVNKASEL FLEVFAKDAH QNALKERKKS ITYENLSSAV CNEKRYKFLS 240 DFVPLRVTAG DALKAVAKEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	31	PTPKKTKQ
2	44	64	KRKRDDAGEPQPQKAAKKADK
3	44	71	KRKRDDAGEPQPQKAAKKADKATPTKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-24	NF-YC family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG081750.1