PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5BG065350.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 438aa MW: 49690.7 Da PI: 9.8277

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG065350.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	21	48	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++r+ tC++G C+F+H+ TRIDC5BG065350.4 21 WKSAICGEYMRSRfkTCSHGVACNFIHC 48 7999***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MNGRYFAGKQ ITCEFVALTK WKSAICGEYM RSRFKTCSHG VACNFIHCFR NPGGDYEWAD 60 WDNPPPKYWT RKMAALFGPS DDAVFDKASD TPDFERLHSS DRKRLRSSDD RYISNRNGDG 120 DAHKRHSSRV FSHSKQEQSN HIMKYGHTRH RREPSAPNER RGQEIEGDIG RYCSPMENER 180 ASQAHKHEEK HRDGHGDAAR GYNGKIKSRK HRSERHESLE SGCSDWPSEF ADAGTSRSPS 240 GSKSTNRHNN HKRSGRRSSD DPNLERGYSA ADKSSGKAHI AKSSSRHYVE DDSYGEKGSG 300 RGKSGKHGDH CDDPDDRWLA TNSDVDSDAE AQFPRSSSGV GKGGRNDNAP PVEDDRYQRS 360 SSRSARSRAK DDKSSRKRKK HHREIRKNSD SDDDDPSDSS DVRDLSLHAR RSRSRSSEEG 420 LSLHKRRKGR RGHDSWCS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MNGRYFAGKQ ITCEFVALTK WKSAICGEYM RSRFKTCSHG VACNFIHCFR NPGGDYEWAD  60
WDNPPPKYWT RKMAALFGPS DDAVFDKASD TPDFERLHSS DRKRLRSSDD RYISNRNGDG  120
DAHKRHSSRV FSHSKQEQSN HIMKYGHTRH RREPSAPNER RGQEIEGDIG RYCSPMENER  180
ASQAHKHEEK HRDGHGDAAR GYNGKIKSRK HRSERHESLE SGCSDWPSEF ADAGTSRSPS  240
GSKSTNRHNN HKRSGRRSSD DPNLERGYSA ADKSSGKAHI AKSSSRHYVE DDSYGEKGSG  300
RGKSGKHGDH CDDPDDRWLA TNSDVDSDAE AQFPRSSSGV GKGGRNDNAP PVEDDRYQRS  360
SSRSARSRAK DDKSSRKRKK HHREIRKNSD SDDDDPSDSS DVRDLSLHAR RSRSRSSEEG  420
LSLHKRRKGR RGHDSWCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	380	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-41	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG065350.4