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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5BG063970.8 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 1047aa MW: 117645 Da PI: 6.4519 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 77.1 | 3.5e-24 | 277 | 363 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+fY +YA ++GF+vrk s+k+ n+ +++r +vCskeg+r ++ ++ + +++raetrtgC+a+++vk +++gk++vt+++ +HnH+l
TRIDC5BG063970.8 277 EFYVSYAGTAGFNVRKGCSEKT-ANNVTKSRAYVCSKEGFRPKSFTA--EPKKQRAETRTGCEAHMTVKITTSGKYVVTECVADHNHDLE 363
6*****************9999.66669*************999877..9999**********************************995 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1047 aa Download sequence |
NKAKDSDPAK EVEDGAAGGG GGEGKVEAPK KRGRKPGKKS TPVIEVENSV EKGVAIAGAE 60 NGQAVPSTKN LGRGGDKKDV AEKDVESVIE LEEEHVEVED AAQDGAHDLG DGDDAGSDAG 120 EGVMEKEVEV KEKRGRGRPR KAVTEGNALQ ACVSTDLGVT ASQCAVDERK KILNKYLSKR 180 QSRPASGRPA KIVSRQALAE RRKRGDGGRF LASDGPLPLE RRSKRLEKQN LQNEKKPESK 240 EYEIVEAEQD PETEVVAGPG GEPKVGMVFL NEDKAYEFYV SYAGTAGFNV RKGCSEKTAN 300 NVTKSRAYVC SKEGFRPKSF TAEPKKQRAE TRTGCEAHMT VKITTSGKYV VTECVADHNH 360 DLEAPVVDIQ ILRSQKLLAK LQQPPDPPKV VLIPNDYKNY VRTRHTTDMQ LGDARAISEY 420 LQRMKGENPS FFCSIQVDED DQFRNVFWAD VKSVMDFNYF GDVVCVDTRY SISDYCRPLL 480 LFIGVNHHKQ PTIFGTAFIY DESVESFKWL FETFKSAMSG KQPRTVLTDR STAISDAVAS 540 AWPGTAHRFS LLHLYQNATK VLSDTFQGSE TFAHDFSRSL YDYEEGDFLS SWEILLAKYN 600 LKDNEWLSKL YEDRERWALP YGRDIFCADI AATLRSDNMD AILTGVLKTE IDLPYFFSRY 660 DKFLEEKRLA EQEADYLGVQ MTQRVPPLRL LWQAANTYTP ALFELFRLEF ELVLACMVYC 720 CGEIGPISEY EVTVKNRPQV HFVRFDSSEY MVLCSCKKFE FVGLPCCHAL KVLEIKNIKE 780 LPPQYILKRW RKDAQSESPK ENFGFAAAGE DPKFTVSKRH NSLYRTLYKV AAKAAEDIEG 840 QRFMESQYDQ LLEQVELLLQ AKLHDKPSLS TIMRSQQPNL PQNDTSNSEP RRASSKKNKN 900 VENRRQQQSP LESSKKKKGL VEPEEAELPL RVLAPTISND IPNHMSTPTN QFLAPSHLMQ 960 APYVTQQFGL NSLQGFSGMS PFGQMQEQSP VHLQQPHLQQ PPFHSGPQMH QAPPPDIQSL 1020 QFLSSNPQLG HQTTDQGQYT IPVWDFL |
| Nucleic Localization Signal ? help Back to Top | |||
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| No. | Start | End | Sequence |
| 1 | 133 | 141 | KRGRGRPRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 1e-103 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5BG063970.8 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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