PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5BG063140.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 308aa MW: 33881.5 Da PI: 8.322

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG063140.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++q G+g +W + ++++g++R++k+c++rw++yl TRIDC5BG063140.1 14 KGPWSPEEDATLKSYIEQNGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.7	4.9e-12	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ eEd +++ + G++ W+ Ia+ ++ gRt++++k++w++ TRIDC5BG063140.1 70 GFSDEEDRIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 699***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MGRAPCCDKA SVKKGPWSPE EDATLKSYIE QNGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIRHGG FSDEEDRIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK 120 QSRKDQRQHQ FARQAANGGH KEEASESVAG NNGFAAGAYN WHQHGMAMPP RPMPGSMVEG 180 REGVDESIRK LLFKLGGSSF AALPAPPCLP PSMYGEAPNF VAPSVHTAPL NEGGIHCSGV 240 LPALELDESF QFNQVKLDGL ECFFGMGGQS MRWNEVSPLV CPNTTVASSS QAMQQYCLVE 300 EPVDLGMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	9e-80	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG063140.1