PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG059070.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 145aa MW: 15349.7 Da PI: 8.4178 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.2 | 5.7e-13 | 13 | 37 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV TRIDC5BG059070.8 13 CGGCRTLLMYTRNADTVRCSCCSTV 37 ***********************99 PP | |||||||
2 | zf-LSD1 | 45.3 | 1.4e-14 | 51 | 74 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd TRIDC5BG059070.8 51 CGRCRTTLMYPHGAPSVKCAICDY 74 **********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
PGARAVEMAQ LICGGCRTLL MYTRNADTVR CSCCSTVNLV RPVNNIAHVN CGRCRTTLMY 60 PHGAPSVKCA ICDYITNITN TGINTMPPAP CPRPTSNESA YNASSASVPT PQPQNVTVVV 120 ENPMTVDEKG KLVSNVVVGI TPGKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 5e-33 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG059070.8 |