PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG055240.12
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 298aa    MW: 32832 Da    PI: 8.7028
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG055240.12genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK54.71.9e-174322452
             RWP-RK 24 eLgvclTvLKriCRqyGIkRWPhRkiksl 52
                       +L vc+T+LKriCRq+GI+RWP+Rkik++
  TRIDC5BG055240.12  4 SLTVCPTTLKRICRQHGINRWPSRKIKKV 32
                       689************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
TFLSLTVCPT TLKRICRQHG INRWPSRKIK KVDHSLRKLQ QIIDSVHGGE TAFQLNTLYK  60
DLTNTSVSSD NNLSGSVTVP PHKQSNLTDF EGHRHHRLSS NVPSTSHSHS SCSQSSDSSP  120
SSCSGGSTKH PPQAGVDLLM SGNPVNHSPV QTLQTENASI RGHFPVQEAP DLLHNLNQQA  180
LGGQHSSRSP SPPKQNADAG MRIKATFGSE KVRFRLKPEC SFQELKQEMA RRLSIVDTSF  240
LIVKYLDDDL EWVLMTCDAD LQECLHVYKL ANLQTVKISV HLAPIPEARV TIGHTGLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.17e-29Nin-like family protein