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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG051950.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 469aa MW: 52199.6 Da PI: 6.3842 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 412 | 5.6e-126 | 99 | 468 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA+av+++d +++ ++ l +++s +g+p+qRl y++e+L +rla+s++++ykal+ ++ + e++++++ ++ v+P+lkf TRIDC5BG051950.7 99 LKKLLMSCARAVDEKDSLAIDMTVPVLGKNVSVSGKPLQRLGEYMVEGLVTRLASSGHSIYKALKWQKPN---GCEVISYQRELYAVCPYLKF 188 5799*************************************************************99998...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 +++ N aI eav ge+++HiiDf isqG+QW++L+qaLa+Rp+gpp++RiT ++++es + le +g+ L+++A+e+ +pfef++l TRIDC5BG051950.7 189 GYVSPNGAIAEAVRGEDMIHIIDFRISQGVQWISLIQALAARPGGPPTVRITCIDDSESAyaRGGGLEILGNTLSDIAREFALPFEFHAL-DI 280 ********************************************************998899999************************6.66 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++++e +L v pgEa+aVn+ l lh+++desvs +++rd++L+lvk+lsPkvv++veqe+++n+++F++rf+e+l+ y+a+f+s++++ pr TRIDC5BG051950.7 281 SVSEVEEGHLGVIPGEAVAVNFNLTLHQIPDESVSAANHRDRILRLVKRLSPKVVTFVEQELNTNTGPFMQRFTETLDKYTAIFESIDVERPR 373 89******************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e +er+k+E+ +l+reivn+vacegaer+erhe ++kW+ rl+++GF+p pls+ +++++++ll+ ++ + y++ e++g l+lgWk++pLv+ TRIDC5BG051950.7 374 EPKERTKMEQYCLAREIVNIVACEGAERVERHEVFGKWKGRLTMVGFRPWPLSSLVNATIRTLLQSYSAN-YQLAERDGVLYLGWKNKPLVVS 465 ********************************************************************77.********************** PP GRAS 371 SaW 373 SaW TRIDC5BG051950.7 466 SAW 468 *** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence |
MPNLQKLKLG FNAPRPRIDQ HGASTAISIG HLPGLREIYA KIRGACADAE SALATAISNH 60 PSNPRISVQL VDYTFDDDEI THDKNEQDEV VEEDRGGYLK KLLMSCARAV DEKDSLAIDM 120 TVPVLGKNVS VSGKPLQRLG EYMVEGLVTR LASSGHSIYK ALKWQKPNGC EVISYQRELY 180 AVCPYLKFGY VSPNGAIAEA VRGEDMIHII DFRISQGVQW ISLIQALAAR PGGPPTVRIT 240 CIDDSESAYA RGGGLEILGN TLSDIAREFA LPFEFHALDI SVSEVEEGHL GVIPGEAVAV 300 NFNLTLHQIP DESVSAANHR DRILRLVKRL SPKVVTFVEQ ELNTNTGPFM QRFTETLDKY 360 TAIFESIDVE RPREPKERTK MEQYCLAREI VNIVACEGAE RVERHEVFGK WKGRLTMVGF 420 RPWPLSSLVN ATIRTLLQSY SANYQLAERD GVLYLGWKNK PLVVSSAWH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 1e-167 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG051950.7 |