PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG041450.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 805aa MW: 86918.5 Da PI: 4.3092

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG041450.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	39	61	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C+ +F ++s +++H+ + H TRIDC5BG041450.5 39 ECKKCNLTFEDQSAYVQHQLSfH 61 5******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence
MQSAVSATSV TLSIHNGDSQ GQRQKPYKDE APIEAVRKEC KKCNLTFEDQ SAYVQHQLSF 60 HQRKAKRRKV DKSIGLGVSK DGKLETQESQ RTSEDKPGYF GHGVADVKSQ GQSPAELFGG 120 ASSGDVGAQL SLAAAPCGLQ EITALPEQVE EPSAGEPVSG HQDLPQETTG LPQQEKELSA 180 TEPFAGHQKE HVDNSGDHEI HDGACHIAEE PLAFDVGSNL STCKSPEPEV HEHDSSKDLE 240 FSIADCSGSF DRSHEISKIP QDVPCTADAP GEKSCSDDPM DCADITLPKQ VPEHCDMLDH 300 KFRGFPGGTG FNDQVGNNPL SANLDEPDLS SNSMEVDNSK IACKFGDMLN STSSEYDKPV 360 VDQIDRGVTA LKNDAINIDD GMNIDVRIKE VNLNSCLDTI SSPVSGANCE TSNALHDGNR 420 SSILAQCFGG SSNDDNVCQD ESFVNQNNVS KAEIFVNQSN DMVYQSNLNM NPISPPQISV 480 DYFTNCSMNS EIKNNDNRRD DNAKEQFVNS RNISSNEPGF DAEAYNNDIF TGAMAETSFA 540 QLNNAMNMKT DYSSCYSISD LNTLTGGTAT DGIDFHGMRS SFVSGSTSRS EPNELDFDIK 600 GSMLEALERS DSDLETQYNG GDPAIDSLPA AGTSGTSVDD FMSMHTNFGS LTSLVRSVEG 660 GPMSRLIQDQ CDLQLGFGAQ KQQIYPSFEE HLRMASAGAP QFGNMGRHNP MPVPVPVPEP 720 TLMLGYEPTL MLGYAPQFGS CPPVQLGWDL SKMVGVLQSV CVWCNTRFQH FGTAEQQNDS 780 VGFICPACKD KTSGHLGTLN NGSLL

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence

MQSAVSATSV TLSIHNGDSQ GQRQKPYKDE APIEAVRKEC KKCNLTFEDQ SAYVQHQLSF  60
HQRKAKRRKV DKSIGLGVSK DGKLETQESQ RTSEDKPGYF GHGVADVKSQ GQSPAELFGG  120
ASSGDVGAQL SLAAAPCGLQ EITALPEQVE EPSAGEPVSG HQDLPQETTG LPQQEKELSA  180
TEPFAGHQKE HVDNSGDHEI HDGACHIAEE PLAFDVGSNL STCKSPEPEV HEHDSSKDLE  240
FSIADCSGSF DRSHEISKIP QDVPCTADAP GEKSCSDDPM DCADITLPKQ VPEHCDMLDH  300
KFRGFPGGTG FNDQVGNNPL SANLDEPDLS SNSMEVDNSK IACKFGDMLN STSSEYDKPV  360
VDQIDRGVTA LKNDAINIDD GMNIDVRIKE VNLNSCLDTI SSPVSGANCE TSNALHDGNR  420
SSILAQCFGG SSNDDNVCQD ESFVNQNNVS KAEIFVNQSN DMVYQSNLNM NPISPPQISV  480
DYFTNCSMNS EIKNNDNRRD DNAKEQFVNS RNISSNEPGF DAEAYNNDIF TGAMAETSFA  540
QLNNAMNMKT DYSSCYSISD LNTLTGGTAT DGIDFHGMRS SFVSGSTSRS EPNELDFDIK  600
GSMLEALERS DSDLETQYNG GDPAIDSLPA AGTSGTSVDD FMSMHTNFGS LTSLVRSVEG  660
GPMSRLIQDQ CDLQLGFGAQ KQQIYPSFEE HLRMASAGAP QFGNMGRHNP MPVPVPVPEP  720
TLMLGYEPTL MLGYAPQFGS CPPVQLGWDL SKMVGVLQSV CVWCNTRFQH FGTAEQQNDS  780
VGFICPACKD KTSGHLGTLN NGSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	69	QRKAKRRK

Link Out ? help Back to Top
Ensembl	TRIDC5BG041450.5