PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG041450.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1055aa MW: 114872 Da PI: 4.6287

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG041450.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	299	321	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C+ +F ++s +++H+ + H TRIDC5BG041450.4 299 ECKKCNLTFEDQSAYVQHQLSfH 321 5******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 1055 aa Download sequence
RKQTFSRRRA ATNLPHNLTP STASSSAVAA PTEEDSENRL IVFHLQQLFA RDDPSYLPPP 60 PPIPLQQLPP IPIPAPTIPV PTPPVASVPI QQLPDPDRDL TNPKGVAVDL ARLAELVDPY 120 GEEIRNRTAG LALESELLGF MNELEGQWGS RRRRRKFVEA AIFGDHLPRR WKLILGIKRK 180 ERAAWINCRR YVSPRGHQFA TCREVSSYFM SLLGYVEAKP TTVQNNDMGV RDLSAVNVGV 240 RDLSAVNTAG LHQQNDSTRD MQSAVSATSV TLSIHNGDSQ GQRQKPYKDE APIEAVRKEC 300 KKCNLTFEDQ SAYVQHQLSF HQRKAKRRKV DKSIGLGVSK DGKLETQESQ RTSEDKPGYF 360 GHGVADVKSQ GQSPAELFGG ASSGDVGAQL SLAAAPCGLQ EITALPEQVE EPSAGEPVSG 420 HQDLPQETTG LPQQEKELSA TEPFAGHQKE HVDNSGDHEI HDGACHIAEE PLAFDVGSNL 480 STCKSPEPEV HEHDSSKDLE FSIADCSGSF DRSHEISKIP QDVPCTADAP GEKSCSDDPM 540 DCADITLPKQ VPEHCDMLDH KFRGFPGGTG FNDQVGNNPL SANLDEPDLS SNSMEVDNSK 600 IACKFGDMLN STSSEYDKPV VDQIDRGVTA LKNDAINIDD GMNIDVRIKE VNLNSCLDTI 660 SSPVSGANCE TSNALHDGNR SSILAQCFGG SSNDDNVCQD ESFVNQNNVS KAEIFVNQSN 720 DMVYQSNLNM NPISPPQISV DYFTNCSMNS EIKNNDNRRD DNAKEQFVNS RNISSNEPGF 780 DAEAYNNDIF TGAMAETSFA QLNNAMNMKT DYSSCYSISD LNTLTGGTAT DGIDFHGMRS 840 SFVSGSTSRS EPNELDFDIK GSMLEALERS DSDLETQYNG GDPAIDSLPA AGTSGTSVDD 900 FMSMHTNFGS LTSLVRSVEG GPMSRLIQDQ KQQIYPSFEE HLRMASAGAP QFGNMGRHNP 960 MPVPVPVPEP TLMLGYEPTL MLGYAPQFGS CPPVQLGWDL SKMVGVLQSV CVWCNTRFQH 1020 FGTAEQQNDS VGFICPACKD KTSGHLGTLN NGSLL

Sequence ? help Back to Top

Protein Sequence Length: 1055 aa Download sequence

RKQTFSRRRA ATNLPHNLTP STASSSAVAA PTEEDSENRL IVFHLQQLFA RDDPSYLPPP  60
PPIPLQQLPP IPIPAPTIPV PTPPVASVPI QQLPDPDRDL TNPKGVAVDL ARLAELVDPY  120
GEEIRNRTAG LALESELLGF MNELEGQWGS RRRRRKFVEA AIFGDHLPRR WKLILGIKRK  180
ERAAWINCRR YVSPRGHQFA TCREVSSYFM SLLGYVEAKP TTVQNNDMGV RDLSAVNVGV  240
RDLSAVNTAG LHQQNDSTRD MQSAVSATSV TLSIHNGDSQ GQRQKPYKDE APIEAVRKEC  300
KKCNLTFEDQ SAYVQHQLSF HQRKAKRRKV DKSIGLGVSK DGKLETQESQ RTSEDKPGYF  360
GHGVADVKSQ GQSPAELFGG ASSGDVGAQL SLAAAPCGLQ EITALPEQVE EPSAGEPVSG  420
HQDLPQETTG LPQQEKELSA TEPFAGHQKE HVDNSGDHEI HDGACHIAEE PLAFDVGSNL  480
STCKSPEPEV HEHDSSKDLE FSIADCSGSF DRSHEISKIP QDVPCTADAP GEKSCSDDPM  540
DCADITLPKQ VPEHCDMLDH KFRGFPGGTG FNDQVGNNPL SANLDEPDLS SNSMEVDNSK  600
IACKFGDMLN STSSEYDKPV VDQIDRGVTA LKNDAINIDD GMNIDVRIKE VNLNSCLDTI  660
SSPVSGANCE TSNALHDGNR SSILAQCFGG SSNDDNVCQD ESFVNQNNVS KAEIFVNQSN  720
DMVYQSNLNM NPISPPQISV DYFTNCSMNS EIKNNDNRRD DNAKEQFVNS RNISSNEPGF  780
DAEAYNNDIF TGAMAETSFA QLNNAMNMKT DYSSCYSISD LNTLTGGTAT DGIDFHGMRS  840
SFVSGSTSRS EPNELDFDIK GSMLEALERS DSDLETQYNG GDPAIDSLPA AGTSGTSVDD  900
FMSMHTNFGS LTSLVRSVEG GPMSRLIQDQ KQQIYPSFEE HLRMASAGAP QFGNMGRHNP  960
MPVPVPVPEP TLMLGYEPTL MLGYAPQFGS CPPVQLGWDL SKMVGVLQSV CVWCNTRFQH  1020
FGTAEQQNDS VGFICPACKD KTSGHLGTLN NGSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	180	RRRRRKFVEAAIFGDHLPRRWKLILGIKRK
2	152	181	RRRRRKFVEAAIFGDHLPRRWKLILGIKRK
3	153	182	RRRRRKFVEAAIFGDHLPRRWKLILGIKRK
4	322	329	QRKAKRRK

Link Out ? help Back to Top
Ensembl	TRIDC5BG041450.4