PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5BG024740.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 744aa MW: 83744.6 Da PI: 7.2213 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 380.5 | 2.1e-116 | 369 | 740 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++ L++cA+av+++d + a++lL+++++++ +gd qRla++f+++L+arla+++s+ y+ l +++t+ s+ l+ ++l++ ++P+ ++ TRIDC5BG024740.3 369 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKGYHLYFAACPFKRL 458 5789************************************************************999999...8999**************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 sh++ Nq+Il ++++++vHiiDf+i GlQWp+L++ L++R++gpp lRiTg++ pe+g +e++eetg+rLa++A++++vpfe++ +a+ TRIDC5BG024740.3 459 SHFLSNQTILSMTKNAKKVHIIDFGIYFGLQWPCLIRRLSKREGGPPILRITGIDVPEPGfrPTERIEETGQRLAEYAKKFEVPFEYHG-IAS 550 ***********************************************************9*****************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e+++ e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+lea++pr TRIDC5BG024740.3 551 KWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLEATVPR 643 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 ++++r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++ +ak ++ ++ + + ++e+sg+l++gWk+r ++++ TRIDC5BG024740.3 644 DDDQRRLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVIKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAI 736 ********************************************************************888********************** PP GRAS 371 SaWr 374 + W+ TRIDC5BG024740.3 737 TTWK 740 ***8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 744 aa Download sequence |
LRHRPPRQGS MPSAGSVEHQ TISGSLIHSM IQFCGAPEYF MFNDPQPVIP HHVAAEPSHN 60 APVATLSRAT NTETDNPEDW EFISDESLNY ISRMLMEEDI DEKVSVYQEE SATLRATAKP 120 FYDILGHKFP PSPDRTLTTW SLDSPSESSS SGHAQSLSSV GTSGSIGGAV HSNQCHNVGH 180 SEQLEAYRGL CGRSSQPLVA PSSGVSDAAE SLEDPLITNG RIPEYLFESL PTWDFRRGVE 240 EAQKFLPGGD KLVIDLEAAG VSKPQEAVKA IPFNVSRTEV LKAKKNRQSE DLDLIEGRNI 300 KQSAFCSDEP DDWVEMFDDL FRQTEKKATV LREKMRSEAS KNSQVTQAKG TTGVKTRGRK 360 PTKNDVVDLR TILIHCAQAV AADDRRTANE LLKQIKQHSK VNGDGSQRLA FCFAQGLEAR 420 LAGTGSQQYH RLVAKRTTAS DMLKGYHLYF AACPFKRLSH FLSNQTILSM TKNAKKVHII 480 DFGIYFGLQW PCLIRRLSKR EGGPPILRIT GIDVPEPGFR PTERIEETGQ RLAEYAKKFE 540 VPFEYHGIAS KWETIRAEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV 600 NPAIFIHGIV NGSYSVPFFI TRFREALFHF SALFDMLEAT VPRDDDQRRL IERDLFGREA 660 LNVIACEGSD RVERPETYKQ WQVRNLRAGF VQSPLNQDIV IKAKDKVKDI YHKDFVIDED 720 SGWLLQGWKG RIIYAITTWK HNNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-173 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5BG024740.3 |