PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG020600.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GATA

Protein Properties

Length: 495aa MW: 53474.8 Da PI: 9.2528

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG020600.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	35.4	1.5e-11	159	193	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++ +Tp+ R+gp g tLCnaCG+ y k+g+ TRIDC5BG020600.4 159 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 193 99******************************997 PP
2	GATA	32.5	1.2e-10	249	283	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++ plW +g+ g +++C aCG++y+k +l TRIDC5BG020600.4 249 CLHCGSSEPPLWIEGSMGRREVCTACGMRYKKGRL 283 99******************************986 PP
3	GATA	55	1.1e-17	353	387	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++Tp+WR+gp g tLCnaCG++yr +l TRIDC5BG020600.4 353 CQHCGSSETPQWREGPKGRATLCNACGVRYRQGRL 387 *******************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
LLSVILSSAA AARSQPPSMA TAEEGEGGEP PGLGRGRCPR FRRSEATRDM AGGGGAGGKE 60 DGGTEPLLLS VLALPATALP AVVSRLEAAV PRKARSYLPR NVPSAWWSLR IPFIQPLPPA 120 GDPANEEEGR RFPRPQRVQV APSLDPGTAD KPPKRLKRCL HCKAVETPQR RSGPMGRGTL 180 CNACGVWYSK NGTLPEHLPV SSPIVDSPLE NPIWEPEVPG AIYLVRKSAT ERMPPRTEAA 240 PAPRPGTSCL HCGSSEPPLW IEGSMGRREV CTACGMRYKK GRLLPECRPA ECSVTDSRQE 300 SPVINSPPES PIWEPEAPPS VHLPRKPSKK KKRRRSRSEA PSAPWPANKG KRCQHCGSSE 360 TPQWREGPKG RATLCNACGV RYRQGRLLPE YRPMASPTFV PTKHANSHRK VLQLHRTRQS 420 NDEHPSPLPA DSVTNLPPIR DELPTTSTAG LASEDPTDAP GYTDNPINVP SSLDSLLLDG 480 PSAPLIVESE DFAIS

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

LLSVILSSAA AARSQPPSMA TAEEGEGGEP PGLGRGRCPR FRRSEATRDM AGGGGAGGKE  60
DGGTEPLLLS VLALPATALP AVVSRLEAAV PRKARSYLPR NVPSAWWSLR IPFIQPLPPA  120
GDPANEEEGR RFPRPQRVQV APSLDPGTAD KPPKRLKRCL HCKAVETPQR RSGPMGRGTL  180
CNACGVWYSK NGTLPEHLPV SSPIVDSPLE NPIWEPEVPG AIYLVRKSAT ERMPPRTEAA  240
PAPRPGTSCL HCGSSEPPLW IEGSMGRREV CTACGMRYKK GRLLPECRPA ECSVTDSRQE  300
SPVINSPPES PIWEPEAPPS VHLPRKPSKK KKRRRSRSEA PSAPWPANKG KRCQHCGSSE  360
TPQWREGPKG RATLCNACGV RYRQGRLLPE YRPMASPTFV PTKHANSHRK VLQLHRTRQS  420
NDEHPSPLPA DSVTNLPPIR DELPTTSTAG LASEDPTDAP GYTDNPINVP SSLDSLLLDG  480
PSAPLIVESE DFAIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	334	KKKKRR
2	329	335	KKKKRRR
3	330	336	KKKKRRR
4	330	335	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	2e-30	GATA family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG020600.4