PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5BG020600.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GATA

Protein Properties

Length: 406aa MW: 44695.9 Da PI: 9.5056

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG020600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	35.7	1.2e-11	70	104	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++ +Tp+ R+gp g tLCnaCG+ y k+g+ TRIDC5BG020600.1 70 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 104 99******************************997 PP
2	GATA	32.8	9.6e-11	160	194	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++ plW +g+ g +++C aCG++y+k +l TRIDC5BG020600.1 160 CLHCGSSEPPLWIEGSMGRREVCTACGMRYKKGRL 194 99******************************986 PP
3	GATA	55.4	8.4e-18	264	298	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++Tp+WR+gp g tLCnaCG++yr +l TRIDC5BG020600.1 264 CQHCGSSETPQWREGPKGRATLCNACGVRYRQGRL 298 *******************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
VPRKARSYLP RNVPSAWWSL RIPFIQPLPP AGDPANEEEG RRFPRPQRVQ VAPSLDPGTA 60 DKPPKRLKRC LHCKAVETPQ RRSGPMGRGT LCNACGVWYS KNGTLPEHLP VSSPIVDSPL 120 ENPIWEPEVP GAIYLVRKSA TERMPPRTEA APAPRPGTSC LHCGSSEPPL WIEGSMGRRE 180 VCTACGMRYK KGRLLPECRP AECSVTDSRQ ESPVINSPPE SPIWEPEAPP SVHLPRKPSK 240 KKKRRRSRSE APSAPWPANK GKRCQHCGSS ETPQWREGPK GRATLCNACG VRYRQGRLLP 300 EYRPMASPTF VPTKHANSHR KVLQLHRTRQ SNDEHPSPLP ADSVTNLPPI RDELPTTSTA 360 GLASEDPTDA PGYTDNPINV PSSLDSLLLD GPSAPLIVES EDFAIS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

VPRKARSYLP RNVPSAWWSL RIPFIQPLPP AGDPANEEEG RRFPRPQRVQ VAPSLDPGTA  60
DKPPKRLKRC LHCKAVETPQ RRSGPMGRGT LCNACGVWYS KNGTLPEHLP VSSPIVDSPL  120
ENPIWEPEVP GAIYLVRKSA TERMPPRTEA APAPRPGTSC LHCGSSEPPL WIEGSMGRRE  180
VCTACGMRYK KGRLLPECRP AECSVTDSRQ ESPVINSPPE SPIWEPEAPP SVHLPRKPSK  240
KKKRRRSRSE APSAPWPANK GKRCQHCGSS ETPQWREGPK GRATLCNACG VRYRQGRLLP  300
EYRPMASPTF VPTKHANSHR KVLQLHRTRQ SNDEHPSPLP ADSVTNLPPI RDELPTTSTA  360
GLASEDPTDA PGYTDNPINV PSSLDSLLLD GPSAPLIVES EDFAIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	KKKKRR
2	240	246	KKKKRRR
3	241	247	KKKKRRR
4	241	246	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	9e-31	GATA family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG020600.1