PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG019490.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1172aa MW: 131487 Da PI: 7.333

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG019490.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	1053	1076	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r TRIDC5BG019490.9 1053 FPCDieGCDMSFSSQQDLLLHKRD 1076 789999***************985 PP
2	zf-C2H2	10.7	0.0017	1136	1162	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC5BG019490.9 1136 YECMvpGCGQTFRFVSDFSRHKRKtgH 1162 788888****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1172 aa Download sequence
CSRLVQNPGE FVITFPGAYH CGFSHGFNCG EATNIATPLW LQVAKEAAIR RASTNCGPMI 60 SHYQLLYELA LSLSQREPKD FHTLPRSSRL RDKKKKDEGD TMVKEKFVGS VIENNNLLSI 120 LLDKSSCIIV PETPFPPTSF PTMMEPELTV KQSLTGGHCS ISQQAVHNMS VDVALDKSIV 180 VENMSHSQSV TEASLSAYNR RKLYETKYGE LGTAAFCLSP SKLQSGVTDK DKRGGLLDQG 240 RLPCVQCGVL SFACVAIIQP REAAVQFVLS REGISSSAKP GEVSESDGIS NWITKNIEMV 300 PQQGQASEAL SVSLAHVSDR CGQLYSRNNN GSTSALGLLA STYGSSDSEE ESNQGKDNQL 360 LETSVSFSST VQRQRSNSHL YEECCEAKTT TSLLKSIEDN STTITRCGRD TDINHLAKLR 420 EQGTTYDQCS VYIDLANDLT ISGVKAYSDT HVTTAKSSIE PDVLTQLKYN NDSCRMHVFC 480 LEHALGTWTQ LQKIGGANVM LLCHPEYPRA ESAAKFIAEE LGLKPDWKDV AFEEATDDDI 540 RRIQLALHDE DAEPASSDWA VKMGINIYYS AKQSKSPLYS KQIPYNSIIY EAFGQENPDN 600 LTDYGRQRSG VTKKRVAGCW CGKVWMSNQV HPFLVREHEE HNHAIVCSKV MLGANYHEIV 660 YDEPSLTCNT MVNCSPSKRI SRRKGRDSIE KSGARKKRCS ANDEATLHCS SIGMNSKTIS 720 DQPRNFDDHD KHEGGKITEA PSTQQYQQYT LQSMNMKSSS NKPKDYKGNR NFLDLYDEAN 780 DVDCWFNIDS GDSTAIRHLE DSRQQEFGTV KAKSPGKLQG NMRKSSKCKA GDDSLNGDKK 840 VQKMNKKSIS RKQKDVEINT QFREEYDEDN NWEEVPEGKD HDVKVESRAK TRSGEDDKRN 900 NNSHELNDEY NDMDCWHDIH RGDNATMGNL DNSPVQRLEA AEVKSGGKLH CCKRKSSKGK 960 AKDNYSNGDE KLQMLNIESI SRKQKSDSQF DEGCGRDNAL DSLLNDVDEA TRENCYEVRE 1020 EEMDGMEVKP RGKVQTGKRK TSRCQAGDKA AKFPCDIEGC DMSFSSQQDL LLHKRDICPV 1080 KGCKKKFFCH KYLLQHRKVH MDERPLNCEW KGCKKTFKWP WARTEHMRVH TGVRPYECMV 1140 PGCGQTFRFV SDFSRHKRKT GHSSGKKNKE ST

Sequence ? help Back to Top

Protein Sequence Length: 1172 aa Download sequence

CSRLVQNPGE FVITFPGAYH CGFSHGFNCG EATNIATPLW LQVAKEAAIR RASTNCGPMI  60
SHYQLLYELA LSLSQREPKD FHTLPRSSRL RDKKKKDEGD TMVKEKFVGS VIENNNLLSI  120
LLDKSSCIIV PETPFPPTSF PTMMEPELTV KQSLTGGHCS ISQQAVHNMS VDVALDKSIV  180
VENMSHSQSV TEASLSAYNR RKLYETKYGE LGTAAFCLSP SKLQSGVTDK DKRGGLLDQG  240
RLPCVQCGVL SFACVAIIQP REAAVQFVLS REGISSSAKP GEVSESDGIS NWITKNIEMV  300
PQQGQASEAL SVSLAHVSDR CGQLYSRNNN GSTSALGLLA STYGSSDSEE ESNQGKDNQL  360
LETSVSFSST VQRQRSNSHL YEECCEAKTT TSLLKSIEDN STTITRCGRD TDINHLAKLR  420
EQGTTYDQCS VYIDLANDLT ISGVKAYSDT HVTTAKSSIE PDVLTQLKYN NDSCRMHVFC  480
LEHALGTWTQ LQKIGGANVM LLCHPEYPRA ESAAKFIAEE LGLKPDWKDV AFEEATDDDI  540
RRIQLALHDE DAEPASSDWA VKMGINIYYS AKQSKSPLYS KQIPYNSIIY EAFGQENPDN  600
LTDYGRQRSG VTKKRVAGCW CGKVWMSNQV HPFLVREHEE HNHAIVCSKV MLGANYHEIV  660
YDEPSLTCNT MVNCSPSKRI SRRKGRDSIE KSGARKKRCS ANDEATLHCS SIGMNSKTIS  720
DQPRNFDDHD KHEGGKITEA PSTQQYQQYT LQSMNMKSSS NKPKDYKGNR NFLDLYDEAN  780
DVDCWFNIDS GDSTAIRHLE DSRQQEFGTV KAKSPGKLQG NMRKSSKCKA GDDSLNGDKK  840
VQKMNKKSIS RKQKDVEINT QFREEYDEDN NWEEVPEGKD HDVKVESRAK TRSGEDDKRN  900
NNSHELNDEY NDMDCWHDIH RGDNATMGNL DNSPVQRLEA AEVKSGGKLH CCKRKSSKGK  960
AKDNYSNGDE KLQMLNIESI SRKQKSDSQF DEGCGRDNAL DSLLNDVDEA TRENCYEVRE  1020
EEMDGMEVKP RGKVQTGKRK TSRCQAGDKA AKFPCDIEGC DMSFSSQQDL LLHKRDICPV  1080
KGCKKKFFCH KYLLQHRKVH MDERPLNCEW KGCKKTFKWP WARTEHMRVH TGVRPYECMV  1140
PGCGQTFRFV SDFSRHKRKT GHSSGKKNKE ST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	97	RDKKKKD
2	682	698	RRKGRDSIEKSGARKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-112	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG019490.9