PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG019490.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1114aa MW: 125295 Da PI: 7.2657

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG019490.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	995	1018	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r TRIDC5BG019490.6 995 FPCDieGCDMSFSSQQDLLLHKRD 1018 789999***************985 PP
2	zf-C2H2	10.7	0.0016	1078	1104	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC5BG019490.6 1078 YECMvpGCGQTFRFVSDFSRHKRKtgH 1104 788888****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1114 aa Download sequence
MISHYQLLYE LALSLSQREP KDFHTLPRSS RLRDKKKKDE GDTMVKEKFV GSVIENNNLL 60 SILLDKSSCI IVPETPFPPT SFPTMMEPEL TVKQSLTGGH CSISQQAVHN MSVDVALDKS 120 IVVENMSHSQ SVTEASLSAY NRRKLYETKY GELGTAAFCL SPSKLQSGVT DKDKRGGLLD 180 QGRLPCVQCG VLSFACVAII QPREAAVQFV LSREGISSSA KPGEVSESDG ISNWITKNIE 240 MVPQQGQASE ALSVSLAHVS DRCGQLYSRN NNGSTSALGL LASTYGSSDS EEESNQGKDN 300 QLLETSVSFS STVQRQRSNS HLYEECCEAK TTTSLLKSIE DNSTTITRCG RDTDINHLAK 360 LREQGTTYDQ CSVYIDLAND LTISGVKAYS DTHVTTAKSS IEPDVLTQLK YNNDSCRMHV 420 FCLEHALGTW TQLQKIGGAN VMLLCHPEYP RAESAAKFIA EELGLKPDWK DVAFEEATDD 480 DIRRIQLALH DEDAEPASSD WAVKMGINIY YSAKQSKSPL YSKQIPYNSI IYEAFGQENP 540 DNLTDYGRQR SGVTKKRVAG CWCGKVWMSN QVHPFLVREH EEHNHAIVCS KVMLGANYHE 600 IVYDEPSLTC NTMVNCSPSK RISRRKGRDS IEKSGARKKR CSANDEATLH CSSIGMNSKT 660 ISDQPRNFDD HDKHEGGKIT EAPSTQQYQQ YTLQSMNMKS SSNKPKDYKG NRNFLDLYDE 720 ANDVDCWFNI DSGDSTAIRH LEDSRQQEFG TVKAKSPGKL QGNMRKSSKC KAGDDSLNGD 780 KKVQKMNKKS ISRKQKDVEI NTQFREEYDE DNNWEEVPEG KDHDVKVESR AKTRSGEDDK 840 RNNNSHELND EYNDMDCWHD IHRGDNATMG NLDNSPVQRL EAAEVKSGGK LHCCKRKSSK 900 GKAKDNYSNG DEKLQMLNIE SISRKQKSDS QFDEGCGRDN ALDSLLNDVD EATRENCYEV 960 REEEMDGMEV KPRGKVQTGK RKTSRCQAGD KAAKFPCDIE GCDMSFSSQQ DLLLHKRDIC 1020 PVKGCKKKFF CHKYLLQHRK VHMDERPLNC EWKGCKKTFK WPWARTEHMR VHTGVRPYEC 1080 MVPGCGQTFR FVSDFSRHKR KTGHSSGKKN KEST

Sequence ? help Back to Top

Protein Sequence Length: 1114 aa Download sequence

MISHYQLLYE LALSLSQREP KDFHTLPRSS RLRDKKKKDE GDTMVKEKFV GSVIENNNLL  60
SILLDKSSCI IVPETPFPPT SFPTMMEPEL TVKQSLTGGH CSISQQAVHN MSVDVALDKS  120
IVVENMSHSQ SVTEASLSAY NRRKLYETKY GELGTAAFCL SPSKLQSGVT DKDKRGGLLD  180
QGRLPCVQCG VLSFACVAII QPREAAVQFV LSREGISSSA KPGEVSESDG ISNWITKNIE  240
MVPQQGQASE ALSVSLAHVS DRCGQLYSRN NNGSTSALGL LASTYGSSDS EEESNQGKDN  300
QLLETSVSFS STVQRQRSNS HLYEECCEAK TTTSLLKSIE DNSTTITRCG RDTDINHLAK  360
LREQGTTYDQ CSVYIDLAND LTISGVKAYS DTHVTTAKSS IEPDVLTQLK YNNDSCRMHV  420
FCLEHALGTW TQLQKIGGAN VMLLCHPEYP RAESAAKFIA EELGLKPDWK DVAFEEATDD  480
DIRRIQLALH DEDAEPASSD WAVKMGINIY YSAKQSKSPL YSKQIPYNSI IYEAFGQENP  540
DNLTDYGRQR SGVTKKRVAG CWCGKVWMSN QVHPFLVREH EEHNHAIVCS KVMLGANYHE  600
IVYDEPSLTC NTMVNCSPSK RISRRKGRDS IEKSGARKKR CSANDEATLH CSSIGMNSKT  660
ISDQPRNFDD HDKHEGGKIT EAPSTQQYQQ YTLQSMNMKS SSNKPKDYKG NRNFLDLYDE  720
ANDVDCWFNI DSGDSTAIRH LEDSRQQEFG TVKAKSPGKL QGNMRKSSKC KAGDDSLNGD  780
KKVQKMNKKS ISRKQKDVEI NTQFREEYDE DNNWEEVPEG KDHDVKVESR AKTRSGEDDK  840
RNNNSHELND EYNDMDCWHD IHRGDNATMG NLDNSPVQRL EAAEVKSGGK LHCCKRKSSK  900
GKAKDNYSNG DEKLQMLNIE SISRKQKSDS QFDEGCGRDN ALDSLLNDVD EATRENCYEV  960
REEEMDGMEV KPRGKVQTGK RKTSRCQAGD KAAKFPCDIE GCDMSFSSQQ DLLLHKRDIC  1020
PVKGCKKKFF CHKYLLQHRK VHMDERPLNC EWKGCKKTFK WPWARTEHMR VHTGVRPYEC  1080
MVPGCGQTFR FVSDFSRHKR KTGHSSGKKN KEST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	39	RDKKKKD
2	624	640	RRKGRDSIEKSGARKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	4e-77	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG019490.6