PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG019490.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1395aa MW: 156582 Da PI: 7.4331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG019490.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	1276	1299	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r TRIDC5BG019490.4 1276 FPCDieGCDMSFSSQQDLLLHKRD 1299 789999***************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1395 aa Download sequence
GPTFPTRLQQ VGLSTKNRRG ANRRVWESGE RYTLEAFRTK ARDFELPRHA IPPKHATPLQ 60 LEALFWGACA ARPFNVEYGN DMPGSGFVKR EVLDLDTDSP VGAPRDVGET EWNMRVAPRA 120 RGSLLRAMSR DVAGVTTPML YVAMLYSWFA WHVEDHELHS LNYLHFGKPK TWYGVPRDAM 180 LAFEDAVRVH GYADDLNAIM AFQTLNQKTT VLSPEVLLSA GVPCCRLVQN PGEFVITFPG 240 AYHCGFSHGF NCGEATNIAT PLWLQVAKEA AIRRASTNCG PMISHYQLLY ELALSLSQRE 300 PKDFHTLPRS SRLRDKKKKD EGDTMVKEKF VGSVIENNNL LSILLDKSSC IIVPETPFPP 360 TSFPTMMEPE LTVKQSLTGG HCSISQQAVH NMSVDVALDK SIVVENMSHS QSVTEASLSA 420 YNRRKLYETK YGELGTAAFC LSPSKLQSGV TDKDKRGGLL DQGRLPCVQC GVLSFACVAI 480 IQPREAAVQF VLSREGISSS AKPGEVSESD GISNWITKNI EMVPQQGQAS EALSVSLAHV 540 SDRCGQLYSR NNNGSTSALG LLASTYGSSD SEEESNQGKD NQLLETSVSF SSTVQRQRSN 600 SHLYEECCEA KTTTSLLKSI EDNSTTITRC GRDTDINHLA KLREQGTTYD QCSVYIDLAN 660 DLTISGVKAY SDTHVTTAKS SIEPDVLTQL KYNNDSCRMH VFCLEHALGT WTQLQKIGGA 720 NVMLLCHPEY PRAESAAKFI AEELGLKPDW KDVAFEEATD DDIRRIQLAL HDEDAEPASS 780 DWAVKMGINI YYSAKQSKSP LYSKQIPYNS IIYEAFGQEN PDNLTDYGRQ RSGVTKKRVA 840 GCWCGKVWMS NQVHPFLVRE HEEHNHAIVC SKVMLGANYH EIVYDEPSLT CNTMVNCSPS 900 KRISRRKGRD SIEKSGARKK RCSANDEATL HCSSIGMNSK TISDQPRNFD DHDKHEGGKI 960 TEAPSTQQYQ QYTLQSMNMK SSSNKPKDYK GNRNFLDLYD EANDVDCWFN IDSGDSTAIR 1020 HLEDSRQQEF GTVKAKSPGK LQGNMRKSSK CKAGDDSLNG DKKVQKMNKK SISRKQKDVE 1080 INTQFREEYD EDNNWEEVPE GKDHDVKVES RAKTRSGEDD KRNNNSHELN DEYNDMDCWH 1140 DIHRGDNATM GNLDNSPVQR LEAAEVKSGG KLHCCKRKSS KGKAKDNYSN GDEKLQMLNI 1200 ESISRKQKSD SQFDEGCGRD NALDSLLNDV DEATRENCYE VREEEMDGME VKPRGKVQTG 1260 KRKTSRCQAG DKAAKFPCDI EGCDMSFSSQ QDLLLHKRDI CPVKGCKKKF FCHKYLLQHR 1320 KVHMDERPLN CEWKGCKKTF KWPWARTEHM RVHTGVRPYE CMVPGCGQTF RFVSDFSRHK 1380 RKTGHSSGKK NKEST

Sequence ? help Back to Top

Protein Sequence Length: 1395 aa Download sequence

GPTFPTRLQQ VGLSTKNRRG ANRRVWESGE RYTLEAFRTK ARDFELPRHA IPPKHATPLQ  60
LEALFWGACA ARPFNVEYGN DMPGSGFVKR EVLDLDTDSP VGAPRDVGET EWNMRVAPRA  120
RGSLLRAMSR DVAGVTTPML YVAMLYSWFA WHVEDHELHS LNYLHFGKPK TWYGVPRDAM  180
LAFEDAVRVH GYADDLNAIM AFQTLNQKTT VLSPEVLLSA GVPCCRLVQN PGEFVITFPG  240
AYHCGFSHGF NCGEATNIAT PLWLQVAKEA AIRRASTNCG PMISHYQLLY ELALSLSQRE  300
PKDFHTLPRS SRLRDKKKKD EGDTMVKEKF VGSVIENNNL LSILLDKSSC IIVPETPFPP  360
TSFPTMMEPE LTVKQSLTGG HCSISQQAVH NMSVDVALDK SIVVENMSHS QSVTEASLSA  420
YNRRKLYETK YGELGTAAFC LSPSKLQSGV TDKDKRGGLL DQGRLPCVQC GVLSFACVAI  480
IQPREAAVQF VLSREGISSS AKPGEVSESD GISNWITKNI EMVPQQGQAS EALSVSLAHV  540
SDRCGQLYSR NNNGSTSALG LLASTYGSSD SEEESNQGKD NQLLETSVSF SSTVQRQRSN  600
SHLYEECCEA KTTTSLLKSI EDNSTTITRC GRDTDINHLA KLREQGTTYD QCSVYIDLAN  660
DLTISGVKAY SDTHVTTAKS SIEPDVLTQL KYNNDSCRMH VFCLEHALGT WTQLQKIGGA  720
NVMLLCHPEY PRAESAAKFI AEELGLKPDW KDVAFEEATD DDIRRIQLAL HDEDAEPASS  780
DWAVKMGINI YYSAKQSKSP LYSKQIPYNS IIYEAFGQEN PDNLTDYGRQ RSGVTKKRVA  840
GCWCGKVWMS NQVHPFLVRE HEEHNHAIVC SKVMLGANYH EIVYDEPSLT CNTMVNCSPS  900
KRISRRKGRD SIEKSGARKK RCSANDEATL HCSSIGMNSK TISDQPRNFD DHDKHEGGKI  960
TEAPSTQQYQ QYTLQSMNMK SSSNKPKDYK GNRNFLDLYD EANDVDCWFN IDSGDSTAIR  1020
HLEDSRQQEF GTVKAKSPGK LQGNMRKSSK CKAGDDSLNG DKKVQKMNKK SISRKQKDVE  1080
INTQFREEYD EDNNWEEVPE GKDHDVKVES RAKTRSGEDD KRNNNSHELN DEYNDMDCWH  1140
DIHRGDNATM GNLDNSPVQR LEAAEVKSGG KLHCCKRKSS KGKAKDNYSN GDEKLQMLNI  1200
ESISRKQKSD SQFDEGCGRD NALDSLLNDV DEATRENCYE VREEEMDGME VKPRGKVQTG  1260
KRKTSRCQAG DKAAKFPCDI EGCDMSFSSQ QDLLLHKRDI CPVKGCKKKF FCHKYLLQHR  1320
KVHMDERPLN CEWKGCKKTF KWPWARTEHM RVHTGVRPYE CMVPGCGQTF RFVSDFSRHK  1380
RKTGHSSGKK NKEST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	314	320	RDKKKKD
2	905	921	RRKGRDSIEKSGARKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG019490.4