PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5BG018910.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 308aa MW: 34294.9 Da PI: 8.1245

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.4	5.9e-09	17	39	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.6 17 QEECKYYSTPGGCKFGESCRYLH 39 699*******************9 PP
2	zf-CCCH	30	8.7e-10	66	88	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.6 66 KECPYYMRIGSCKFATNCRFHHP 88 79********************9 PP
3	zf-CCCH	21.7	3.5e-07	211	237	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.6 211 PGQPECQHFVKSGFCKFKAKCKYHHPR 237 5789*********************96 PP
4	zf-CCCH	27.2	6.7e-09	258	283	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.6 258 DQPVCTYYERYGVCKFGPACMYNHPF 283 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
KVAKEKRKET VSEGSAQEEC KYYSTPGGCK FGESCRYLHY EGKERKTEVA KVELNFLGLP 60 LRPGGKECPY YMRIGSCKFA TNCRFHHPDP TNVVSRDPML EHENGDIPQQ NVQASSQLNV 120 PVWPADQRAL NEHCAPFLAP ASSYSAGMIP PRGMYPSPEW SGYHQVPLGP YYPPGISFHH 180 FPAPPVNHPM YRGADVPGHQ ELPSDEYPER PGQPECQHFV KSGFCKFKAK CKYHHPRSLV 240 PPPTAGALSP LGLPLRPDQP VCTYYERYGV CKFGPACMYN HPFNFGHPVS AAGPPLSAQY 300 LTSGNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	7e-65	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.6