PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5BG018910.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 540aa MW: 59666.3 Da PI: 7.9778

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.5e-10	130	152	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5BG018910.4 130 PDCTYYLKFGTCRFGMKCKFNHP 152 89********************8 PP
2	zf-CCCH	26.4	1.2e-08	249	271	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.4 249 QEECKYYSTPGGCKFGESCRYLH 271 699*******************9 PP
3	zf-CCCH	29.1	1.7e-09	298	320	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.4 298 KECPYYMRIGSCKFATNCRFHHP 320 79********************9 PP
4	zf-CCCH	20.7	7.1e-07	443	469	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.4 443 PGQPECQHFVKSGFCKFKAKCKYHHPR 469 5789*********************96 PP
5	zf-CCCH	26.2	1.4e-08	490	515	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.4 490 DQPVCTYYERYGVCKFGPACMYNHPF 515 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
HTLDKGFSFF PFVAPPTCSR RRRCLSLSPR RPMADADAKA PPKSNLDADL IASISPSSTS 60 SGARSAVAIE SQFADLAISD ELPKPSGWGD DAVRGIAGSD EITGEITGGK VQPVATADSR 120 PRFPQRHAEP DCTYYLKFGT CRFGMKCKFN HPARKKKNRV KESGSSSIGS NDISNKAFPP 180 DDDQTPKEEY EDPVPNISAE VDLLGRMEAM QLKIADETEK GFYLKKFKET EQKVAKEKRK 240 ETVSEGSAQE ECKYYSTPGG CKFGESCRYL HYEGKERKTE VAKVELNFLG LPLRPGGKEC 300 PYYMRIGSCK FATNCRFHHP DPTNVVSRDP MLEHENGDIP QQNVQASSQL NVPVWPADQR 360 ALNEHCAPFL APASSYSAGM IPPRGMYPSP EWSGYHQVPL GPYYPPGISF HHFPAPPVNH 420 PMYRGADVPG HQELPSDEYP ERPGQPECQH FVKSGFCKFK AKCKYHHPRS LVPPPTAGAL 480 SPLGLPLRPD QPVCTYYERY GVCKFGPACM YNHPFNFGHP VSAAGPPLSA QYLTSGNYTV

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

HTLDKGFSFF PFVAPPTCSR RRRCLSLSPR RPMADADAKA PPKSNLDADL IASISPSSTS  60
SGARSAVAIE SQFADLAISD ELPKPSGWGD DAVRGIAGSD EITGEITGGK VQPVATADSR  120
PRFPQRHAEP DCTYYLKFGT CRFGMKCKFN HPARKKKNRV KESGSSSIGS NDISNKAFPP  180
DDDQTPKEEY EDPVPNISAE VDLLGRMEAM QLKIADETEK GFYLKKFKET EQKVAKEKRK  240
ETVSEGSAQE ECKYYSTPGG CKFGESCRYL HYEGKERKTE VAKVELNFLG LPLRPGGKEC  300
PYYMRIGSCK FATNCRFHHP DPTNVVSRDP MLEHENGDIP QQNVQASSQL NVPVWPADQR  360
ALNEHCAPFL APASSYSAGM IPPRGMYPSP EWSGYHQVPL GPYYPPGISF HHFPAPPVNH  420
PMYRGADVPG HQELPSDEYP ERPGQPECQH FVKSGFCKFK AKCKYHHPRS LVPPPTAGAL  480
SPLGLPLRPD QPVCTYYERY GVCKFGPACM YNHPFNFGHP VSAAGPPLSA QYLTSGNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	1e-70	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.4