PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5BG018910.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 530aa MW: 58544.9 Da PI: 7.5072

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG018910.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.3e-10	96	118	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +++++GtC++G +CkF+H+ TRIDC5BG018910.10 96 PDCTYYLKFGTCRFGMKCKFNHP 118 89********************8 PP
2	zf-CCCH	26.4	1.2e-08	239	261	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G++C++ H TRIDC5BG018910.10 239 QEECKYYSTPGGCKFGESCRYLH 261 699*******************9 PP
3	zf-CCCH	29.1	1.7e-09	288	310	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5BG018910.10 288 KECPYYMRIGSCKFATNCRFHHP 310 79********************9 PP
4	zf-CCCH	20.8	6.9e-07	433	459	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.10 433 PGQPECQHFVKSGFCKFKAKCKYHHPR 459 5789*********************96 PP
5	zf-CCCH	26.3	1.3e-08	480	505	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.10 480 DQPVCTYYERYGVCKFGPACMYNHPF 505 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
DADAKAPPKS NLDADLIASI SPSSTSSGAR SAVAIESQFA DLAISDELPK PSGWGDDAVR 60 GIAGSDEITG EITGGKVQPV ATADSRPRFP QRHAEPDCTY YLKFGTCRFG MKCKFNHPAR 120 KKKNRVKESG SSSIGSNDIS NKAFPPDDDQ TPKEEYEDPV PNISAEVDLL GFVDKENTSN 180 LRNLNRTSHE KGRMEAMQLK IADETEKGFY LKKFKETEQK ILKVAKEKRK ETVSEGSAQE 240 ECKYYSTPGG CKFGESCRYL HYEGKERKTE VAKVELNFLG LPLRPGGKEC PYYMRIGSCK 300 FATNCRFHHP DPTNVVSRDP MLEHENGDIP QQNVQASSQL NVPVWPADQR ALNEHCAPFL 360 APASSYSAGM IPPRGMYPSP EWSGYHQVPL GPYYPPGISF HHFPAPPVNH PMYRGADVPG 420 HQELPSDEYP ERPGQPECQH FVKSGFCKFK AKCKYHHPRS LVPPPTAGAL SPLGLPLRPD 480 QPVCTYYERY GVCKFGPACM YNHPFNFGHP VSAAGPPLSA QYLTSGNYTV

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

DADAKAPPKS NLDADLIASI SPSSTSSGAR SAVAIESQFA DLAISDELPK PSGWGDDAVR  60
GIAGSDEITG EITGGKVQPV ATADSRPRFP QRHAEPDCTY YLKFGTCRFG MKCKFNHPAR  120
KKKNRVKESG SSSIGSNDIS NKAFPPDDDQ TPKEEYEDPV PNISAEVDLL GFVDKENTSN  180
LRNLNRTSHE KGRMEAMQLK IADETEKGFY LKKFKETEQK ILKVAKEKRK ETVSEGSAQE  240
ECKYYSTPGG CKFGESCRYL HYEGKERKTE VAKVELNFLG LPLRPGGKEC PYYMRIGSCK  300
FATNCRFHHP DPTNVVSRDP MLEHENGDIP QQNVQASSQL NVPVWPADQR ALNEHCAPFL  360
APASSYSAGM IPPRGMYPSP EWSGYHQVPL GPYYPPGISF HHFPAPPVNH PMYRGADVPG  420
HQELPSDEYP ERPGQPECQH FVKSGFCKFK AKCKYHHPRS LVPPPTAGAL SPLGLPLRPD  480
QPVCTYYERY GVCKFGPACM YNHPFNFGHP VSAAGPPLSA QYLTSGNYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	8e-65	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG018910.10