PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG009030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 179aa MW: 18771.9 Da PI: 8.4389 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.5 | 4.4e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGApsV+Ca+C++V TRIDC5BG009030.1 7 CHGCRSVLLYPRGAPSVCCAVCHAV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 42.6 | 9.8e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r+A+ VRC++CdtV TRIDC5BG009030.1 46 CVGCRTLLMYTRNATTVRCSCCDTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 49 | 1e-15 | 87 | 111 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA+sV+Ca+C+++ TRIDC5BG009030.1 87 CGQCQTVLMYPYGASSVKCAICNFI 111 ***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MQSQIVCHGC RSVLLYPRGA PSVCCAVCHA VTNAPPPGME MAQLICVGCR TLLMYTRNAT 60 TVRCSCCDTV NLARPAPPVN SIAHVNCGQC QTVLMYPYGA SSVKCAICNF ITNIGMNTVR 120 PLPPTMHAPN GISYSVPSTS APSAQSQNVT VVVENPMTVD DKGKLVSNVV VGVTSGGKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 3e-53 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG009030.1 |