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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5BG000790.5 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 1116aa MW: 123470 Da PI: 8.8187 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 13 | 48 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
W+++E e+++ a +++G++ W+++a + Rt ++
TRIDC5BG000790.5 13 QWSKDELERFYAAYRKYGKD-WRKVAGAVH-DRTSDMV 48
6*****************99.******999.9997665 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1116 aa Download sequence |
MPYKKKLSDL GSQWSKDELE RFYAAYRKYG KDWRKVAGAV HDRTSDMVEA LYNMNRAYLS 60 LPEGTATAAG LIAMMTDHYN ILDGSNSDHE SNGSPKTSRK PQKRGRAKLQ SVSKASDTRY 120 PDLLQSQPAS SSYGCLSLLK KKRSGDLFVG NKPRAVGKRT PRVPVASMYH RDDKAGPSNR 180 QAKPDANNGD EEGALAALAL AEVCQRGSPQ VSQTSGRSSG QLFLSPGKSI DRKNADSEMG 240 SSKMHGFQVD TDYPEGSLGS REAETADYPK DASYFLNNEG SASGKSKPKV KRSQKRRKKA 300 AHKTDDQFED DREACSGTEE GCSSRKAKDI SELDVFGSKG SWPSNKSNKR SRQLFFGDEL 360 SALDALHTLA DISVNILQPS SIAESESSAQ FKDGSKDNES DDKPSVPAAV SLFDKKDKPR 420 KTKKIKRQSE IASNEVVTRK KARLSKDHHH DGSTSEVKQD DCKCGVKMEK KKRKSSTLKI 480 SKDEKNTLKD SEKTEASAEE GKVSSNKAMD AVDTTENAIT QQSDSASKSK SRRKLGILKA 540 LAPESKPAEG ADDSCDNVSY PVNNAIELKD KLSHCLSSRF LRRWCMSEWF YSAIDYPWFA 600 KSEFVEYLNH VKLGHVPRLT RVEWGVIRSS LGKPRRLSKQ FLQEEREKLS QYRESVRQHY 660 AELQSGVREG LPTDLARPLA VGQRVIACHP KTRELHDGSV LTVDRNRCRV QFDRPELGVE 720 FVMDIDCMPL HPLENFPESL RRQNIVNKYY SSFSEVKFED RSKEYGGGGA PRFIPNVSFH 780 SCLTVPSQGD AFDSTAQAKT TANEATVAAH QAMYGQPCTL SQIQEREADI RALAELSRAL 840 DKKEALLVEL RHMNEEVSGK QKDGEIIRDL EHFRKQYAMV LVQLRDSNDH VASALLCLRQ 900 RNTFHGQPTQ SYPNKSTENG GAFNRTPDPS SNLFGYINQE SGSQVMEIIE TSRSKAKTMV 960 DVAVQAMCKV SEGENAFAKI GEALDNLNLR GTGSGSSILG IRRIPPDSGQ ANSDNCAAGR 1020 FDPAAAANNI SSPRVLPNGS DSDAQFPSEL ISSCVATILM IQNCTEKQYH PAEVAHILDS 1080 ALSRLQPCSS QNVPIFREIE MCMGIIKNQM LALIPT |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 287 | 299 | KPKVKRSQKRRKK |
| 2 | 290 | 296 | VKRSQKR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G21430.2 | 1e-167 | MYB_related family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5BG000790.5 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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