PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG000070.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 64aa MW: 7046.21 Da PI: 11.4926 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.3 | 1.7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n nrqvtfskRr g++KKA EL +LCda+ a+iifsstg+ly ++s TRIDC5BG000070.2 9 ERIDNAANRQVTFSKRRGGLMKKARELAILCDADLALIIFSSTGRLYNFAS 59 69***********************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence |
MGRGKIAIER IDNAANRQVT FSKRRGGLMK KARELAILCD ADLALIIFSS TGRLYNFASS 60 RSVS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 6e-20 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG000070.2 |