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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG073520.3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 286aa MW: 30284.6 Da PI: 9.4911 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 43.9 | 4.1e-14 | 108 | 159 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+ +N+ ++ Lr l+P++ + ++ + a+++ A++Y+k+L+
TRIDC5AG073520.3 108 QRMTHIAVERNRRRLMNDHLASLRALIPSD---YIPRGDQATVVGGAIDYVKQLE 159
79****************************...9*******************96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 286 aa Download sequence |
VVVVMDQCWA DQAAASASAA QVPFLALLQG ATMGDGGPGV KRESYGAAAG FACRPAASDV 60 DLLESCVTQL PAPPVVEAPA TKRRKRPRTR PRAPPPEKRK KPEEAECQRM THIAVERNRR 120 RLMNDHLASL RALIPSDYIP RGDQATVVGG AIDYVKQLEQ QLVALQALAA AQRGEGPVGT 180 AATAASDGVF VSPQYTSFSQ VGGIGGGVDV EAMAAVGGHV RLRVAGRRWP GRLVRAVAAM 240 ENLRMAVLHL AVTSVGHDAV VYCFNLKVAN QSSQSYTNLT SHLDFA |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 82 | 100 | KRRKRPRTRPRAPPPEKRK |
| 2 | 82 | 101 | KRRKRPRTRPRAPPPEKRKK |
| 3 | 83 | 101 | KRRKRPRTRPRAPPPEKRK |
| 4 | 83 | 102 | KRRKRPRTRPRAPPPEKRKK |
| 5 | 84 | 102 | KRRKRPRTRPRAPPPEKRK |
| 6 | 84 | 103 | KRRKRPRTRPRAPPPEKRKK |
| 7 | 88 | 101 | RTRPRAPPPEKRKK |
| 8 | 109 | 120 | RMTHIAVERNRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G46810.1 | 1e-34 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG073520.3 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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