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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG073520.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 302aa MW: 31882.6 Da PI: 8.3993 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 43.8 | 4.5e-14 | 114 | 165 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+ +N+ ++ Lr l+P++ + ++ + a+++ A++Y+k+L+
TRIDC5AG073520.2 114 QRMTHIAVERNRRRLMNDHLASLRALIPSD---YIPRGDQATVVGGAIDYVKQLE 165
79****************************...9*******************96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 302 aa Download sequence |
SSRLMVVVVV MDQCWADQAA ASASAAQVPF LALLQGATMG DGGPGVKRES YGAAAGFACR 60 PAASDVDLLE SCVTQLPAPP VVEAPATKRR KRPRTRPRAP PPEKRKKPEE AECQRMTHIA 120 VERNRRRLMN DHLASLRALI PSDYIPRGDQ ATVVGGAIDY VKQLEQQLVA LQALAAAQRG 180 EGPVGTAATA ASDGVFVSPQ YTSFSQVGGI GGGVDVEAMA AVGGHVRLRV AGRRWPGRLV 240 RAVAAMENLR MAVLHLAVTS VGHDAVVYCF NLKMEDGCEV STADEVATVV HQIFAYAAGS 300 CC |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 88 | 106 | KRRKRPRTRPRAPPPEKRK |
| 2 | 88 | 107 | KRRKRPRTRPRAPPPEKRKK |
| 3 | 89 | 107 | KRRKRPRTRPRAPPPEKRK |
| 4 | 89 | 108 | KRRKRPRTRPRAPPPEKRKK |
| 5 | 90 | 108 | KRRKRPRTRPRAPPPEKRK |
| 6 | 90 | 109 | KRRKRPRTRPRAPPPEKRKK |
| 7 | 94 | 107 | RTRPRAPPPEKRKK |
| 8 | 115 | 126 | RMTHIAVERNRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G01460.1 | 1e-45 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG073520.2 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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