PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG070830.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 312aa    MW: 34463.5 Da    PI: 7.8663
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG070830.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.71.2e-124694155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s++kGV   + +grW A+I++      + r++lg+f  +e Aa+a++ a+++++g
  TRIDC5AG070830.3 46 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFADEESAARAYDVAALRFRG 94
                      689***9788.8*********3.....5*************************98 PP
2B395.14.8e-30165257185
                       EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+k+ tpsdv+k++rlv+pk++ae+h         g++ ++  l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD+v+F+++
  TRIDC5AG070830.3 165 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGLLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLVAGDTVTFSRS 257
                       89****************************999955667899************************************************943 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
LSFTEFRRSI FIFEDIPGHM KNEHHTICPT EMDAVESSSP APAPSSRFKG VVPQPNGRWG  60
AQIYEKHSRV WLGTFADEES AARAYDVAAL RFRGRDAVTN YQLPLAVEGA SSSSTSELAF  120
LADHSKAEIV DMLRKHTYAD ELRQGLRRGH GRAQPTPAWA REFLFEKAVT PSDVGKLNRL  180
VVPKQHAEKH FPPTTAAATG SNGKGLLLNF EDGEGKVWRF RYSYWNSSQS YVLTKGWSRF  240
VREKGLVAGD TVTFSRSAYV MNDTEEQLFI DYKQKNKNDE AADAAKNEAG HAAVKLFGVD  300
IGGGEMAGSS GG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-101RAV family protein