PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG070830.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 332aa    MW: 36287.4 Da    PI: 8.6239
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG070830.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1266114155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      + r++lg+f  +e Aa+a++ a+++++g
  TRIDC5AG070830.1  66 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFADEESAARAYDVAALRFRG 114
                       689***9788.8*********3.....5*************************98 PP
2B394.95.4e-30185277185
                       EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+k+ tpsdv+k++rlv+pk++ae+h         g++ ++  l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD+v+F+++
  TRIDC5AG070830.1 185 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGLLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLVAGDTVTFSRS 277
                       89****************************999955667899************************************************943 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
LFLTIPRSRH KSRHLRNGHS ACQLSPPMAS GKPTNPEIDN DMECSSPESG AEDAVESSSP  60
APAPSSRFKG VVPQPNGRWG AQIYEKHSRV WLGTFADEES AARAYDVAAL RFRGRDAVTN  120
YQLPLAVEGA SSSSTSELAF LADHSKAEIV DMLRKHTYAD ELRQGLRRGH GRAQPTPAWA  180
REFLFEKAVT PSDVGKLNRL VVPKQHAEKH FPPTTAAATG SNGKGLLLNF EDGEGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VREKGLVAGD TVTFSRSAYV MNDTEEQLFI DYKQKNKNDE  300
AADAAKNEAG HAAVKLFGVD IGGGEMAGSS GG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-101RAV family protein