PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG061240.14
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 434aa    MW: 49311.1 Da    PI: 9.7567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG061240.14genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.2e-082148126
                       --S---SGGGGTS..--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
                       +k ++C  ++r+   tC++G  C+F+H+
  TRIDC5AG061240.14 21 WKSAICGEYMRSRfkTCSHGVACNFIHC 48
                       7999***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MNGRYFAGKQ ITCEFVALTK WKSAICGEYM RSRFKTCSHG VACNFIHCFR NPGGDYEWAD  60
WDNPPPKYWT RKMAALFGPS DDAVFDKASD TPDFERLHSS DRKRQRSSDD RYISSRHGDG  120
DTHKRHSSRV FSHSKQEQSN HIMKYGHTRD RREPSAANEQ RGQEIEDDTG RYCSPMENER  180
VSQAHKHEEK HRDGHGDGAR GYNGKIKSRK HRSERHESLE SGCSDWPSEF ADAGTSRSPS  240
GSKSTNRHNN HKRSRRQSSD DPNLERGYTA AGKSSGKVHI AKSSSRHYVE DDSYGEKGSR  300
RGKSGKHSDR CDDPDDRWLA TNSDVDSDAE TRFPRSSSGV GKGGRNDDAP PDEDDRYQRS  360
SSRSGRSRAK DDKSSSRRKK HHSEIRKTSD SDDGPSDSSD IRDLSLPAWR SRSRSSEEGL  420
SLHKRRKGRR GHDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-41C3H family protein