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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG059790.5 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 1022aa MW: 115181 Da PI: 7.6077 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 75.7 | 9.3e-24 | 306 | 392 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+fY +YA ++GF+vrk s+k+ n+ + +r +vCskeg+r ++ ++ + +++rae rtgC+a+++v+ +++gk++vt+ + +HnH+l
TRIDC5AG059790.5 306 EFYVSYAGTAGFNVRKGCSEKT-ANNVTRSRSYVCSKEGFRPKSVTA--EPKKQRAEIRTGCEAHMTVRITTSGKYVVTEYVADHNHDLE 392
6*****************9999.66669***************9988..9999**********************************995 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1022 aa Download sequence |
GSNRRSAGTG GMIMQRFLCC RGNYSYRKGN KAKDSAAPKE VEEGAAGEGE GEGKVGAHKK 60 RGRKPGKKST PVIKVKNSVE KGVATAGTGN GQAVPSTENL GRGGDKKDAV EKDVESVVEL 120 EEEHVEVEDA AQDGAHDLGD GDDANSDAHE GEMEKEVEVK EKRGRGRPRK AVTEDNALQA 180 CVSTDLGVMA SQCAVDERKK ILNKYLSKRQ SRPASGRPAK IVSCQALAER RKRGDGGRFL 240 SSDGPLPSER RSKRLEKQNL KNEKKPESKE DEIVEAEQDP ETEVVAGPGG EPKVGMVFLN 300 EDKAYEFYVS YAGTAGFNVR KGCSEKTANN VTRSRSYVCS KEGFRPKSVT AEPKKQRAEI 360 RTGCEAHMTV RITTSGKYVV TEYVADHNHD LEAPLVDIQI LRSQKLLAKL QQPPDPPKVV 420 LIPNDYKNYV RTRHTKDMQS GDAQAISEYL QRMKGKNPSF FCSIQVDEDD QFRNVFWADV 480 KSVMDFNYFG DVVCVDTRYS TSDYCRPLLL FIGVNHHKEP TIFGTAFIYD ESVESFKWLF 540 ETFKSAMSGK QPRTVLTDRS TAISDAVASA WPGTAHRFSL LHLYQNATKV LSDTFQGSET 600 FAHDFSRSLY DYEEEGDFLS SWEILLAKYN LKDNKWLSKL YEDRERWALP YGRDIFCADI 660 AATLRSDNMD AILTGVLKTE IDLPYFFNRY DKFLEEKRLA EQQADYLGVQ MTQRVPPLRL 720 LWQAANTYTP ALFEMFRLEF ELVLSCMVYC CGEIGPISEY EVTVKNRPQV HFVRFDSSEY 780 MVVCSCKKFE FVGLPCCHVL KVLEIKNIKE LPPQYILKRW RKDAQSESPK ENFGFAAVDE 840 DPKFTVSKRH NSLYRTLYKV AAKAAENIEG QRFMESQYDQ LLEQVELLLQ AKLHDKPSLS 900 TIMRSQQPNL PQNDTSNSEP RRASSKKNKN VENRRQQQSP LESSKKKKGR QGLVEPEEAE 960 LPLRVLAPTI SNDIPNHMST PTNQFLAPNH IMQAPYVTQQ FGLNSLQGFS GMTPFGQVMD 1020 IF |
| Nucleic Localization Signal ? help Back to Top | |||
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| No. | Start | End | Sequence |
| 1 | 162 | 170 | KRGRGRPRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 1e-109 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG059790.5 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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