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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG059790.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 1027aa MW: 116117 Da PI: 7.0287 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 75.7 | 9.3e-24 | 255 | 341 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+fY +YA ++GF+vrk s+k+ n+ + +r +vCskeg+r ++ ++ + +++rae rtgC+a+++v+ +++gk++vt+ + +HnH+l
TRIDC5AG059790.2 255 EFYVSYAGTAGFNVRKGCSEKT-ANNVTRSRSYVCSKEGFRPKSVTA--EPKKQRAEIRTGCEAHMTVRITTSGKYVVTEYVADHNHDLE 341
6*****************9999.66669***************9988..9999**********************************995 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1027 aa Download sequence |
EGKVGAHKKR GRKPGKKSTP VIKVKNSVEK GVATAGTGNG QAVPSTENLG RGGDKKDAVE 60 KDVESVVELE EEHVEVEDAA QDGAHDLGDG DDANSDAHEG EMEKEVEVKE KRGRGRPRKA 120 VTEDNALQAC VSTDLGVMAS QCAVDERKKI LNKYLSKRQS RPASGRPAKI VSCQALAERR 180 KRGDGGRFLS SDGPLPSERR SKRLEKQNLK NEKKPESKED EIVEAEQDPE TEVVAGPGGE 240 PKVGMVFLNE DKAYEFYVSY AGTAGFNVRK GCSEKTANNV TRSRSYVCSK EGFRPKSVTA 300 EPKKQRAEIR TGCEAHMTVR ITTSGKYVVT EYVADHNHDL EAPLVDIQIL RSQKLLAKLQ 360 QPPDPPKVVL IPNDYKNYVR TRHTKDMQSG DAQAISEYLQ RMKGKNPSFF CSIQVDEDDQ 420 FRNVFWADVK SVMDFNYFGD VVCVDTRYST SDYCRPLLLF IGVNHHKEPT IFGTAFIYDE 480 SVESFKWLFE TFKSAMSGKQ PRTVLTDRST AISDAVASAW PGTAHRFSLL HLYQNATKVL 540 SDTFQGSETF AHDFSRSLYD YEEEGDFLSS WEILLAKYNL KDNKWLSKLY EDRERWALPY 600 GRDIFCADIA ATLRSDNMDA ILTGVLKTEI DLPYFFNRYD KFLEEKRLAE QQADYLGVQM 660 TQRVPPLRLL WQAANTYTPA LFEMFRLEFE LVLSCMVYCC GEIGPISEYE VTVKNRPQVH 720 FVRFDSSEYM VVCSCKKFEF VGLPCCHVLK VLEIKNIKEL PPQYILKRWR KDAQSESPKE 780 NFGFAAVDED PKFTVSKRHN SLYRTLYKVA AKAAENIEGQ RFMESQYDQL LEQVELLLQA 840 KLHDKPSLST IMRSQQPNLP QNDTSNSEPR RASSKKNKNV ENRRQQQSPL ESSKKKKGRQ 900 GLVEPEEAEL PLRVLAPTIS NDIPNHMSTP TNQFLAPNHI MQAPYVTQQF GLNSLQGFSG 960 MTPFGQEQSP VHLQQPHLQQ SPFHGGPQMH QAPPPDIQSL QFLSSNPQLG HQTTDQGQYT 1020 IPVWDFL |
| Nucleic Localization Signal ? help Back to Top | |||
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| No. | Start | End | Sequence |
| 1 | 111 | 119 | KRGRGRPRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 1e-109 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG059790.2 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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