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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG059790.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 990aa MW: 112027 Da PI: 7.31 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 75.8 | 8.9e-24 | 250 | 336 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+fY +YA ++GF+vrk s+k+ n+ + +r +vCskeg+r ++ ++ + +++rae rtgC+a+++v+ +++gk++vt+ + +HnH+l
TRIDC5AG059790.10 250 EFYVSYAGTAGFNVRKGCSEKT-ANNVTRSRSYVCSKEGFRPKSVTA--EPKKQRAEIRTGCEAHMTVRITTSGKYVVTEYVADHNHDLE 336
6*****************9999.66669***************9988..9999**********************************995 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 990 aa Download sequence |
AHKKRGRKPG KKSTPVIKVK NSVEKGVATA GTGNGQAVPS TENLGRGGDK KDAVEKDVES 60 VVELEEEHVE VEDAAQDGAH DLGDGDDANS DAHEGEMEKE VEVKEKRGRG RPRKAVTEDN 120 ALQACVSTDL GVMASQCAVD ERKKILNKYL SKRQSRPASG RPAKIVSCQA LAERRKRGDG 180 GRFLSSDGPL PSERRSKRLE KQNLKNEKKP ESKEDEIVEA EQDPETEVVA GPGGEPKVGM 240 VFLNEDKAYE FYVSYAGTAG FNVRKGCSEK TANNVTRSRS YVCSKEGFRP KSVTAEPKKQ 300 RAEIRTGCEA HMTVRITTSG KYVVTEYVAD HNHDLEAPLV DIQILRSQKL LAKLQQPPDP 360 PKVVLIPNDY KNYVRTRHTK DMQSGDAQAI SEYLQRMKGK NPSFFCSIQV DEDDQFRNVF 420 WADVKSVMDF NYFGDVVCVD TRYSTSDYCR PLLLFIGVNH HKEPTIFGTA FIYDESVESF 480 KWLFETFKSA MSGKQPRTVL TDRSTAISDA VASAWPGTAH RFSLLHLYQN ATKVLSDTFQ 540 GSETFAHDFS RSLYDYEEEG DFLSSWEILL AKYNLKDNKW LSKLYEDRER WALPYGRDIF 600 CADIAATLRS DNMDAILTGV LKTEIDLPYF FNRYDKFLEE KRLAEQQADY LGVQMTQRVP 660 PLRLLWQAAN TYTPALFEMF RLEFELVLSC MVYCCGEIGP ISEYEVTVKN RPQVHFVRFD 720 SSEYMVVCSC KKFEFVGLPC CHVLKVLEIK NIKELPPQYI LKRWRKDAQS ESPKENFGFA 780 AVDEDPKFTV SKRHNSLYRT LYKVAAKAAE NIEGQRFMES QYDQLLEQVE LLLQAKLHDK 840 PSLSTIMRSQ QPNLPQNDTS NSEPRRASSK KNKNVENRRQ QQSPLESSKK KKGRQGLVEP 900 EEAELPLRVL APTISNDIPN HMSTPTNQFL APNHIMQAPY VTQQFGLNSL QGFSGMTPFG 960 QMQEQSPVHL QQPHLQQSPF HGGPQMHQGS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 106 | 114 | KRGRGRPRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 1e-110 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG059790.10 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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