PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5AG055120.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 142aa MW: 15028.3 Da PI: 8.0841 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.2 | 5.5e-13 | 12 | 36 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV TRIDC5AG055120.6 12 CGGCRTLLMYTRNADTVRCSCCSTV 36 ***********************99 PP | |||||||
2 | zf-LSD1 | 45.4 | 1.4e-14 | 50 | 73 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd TRIDC5AG055120.6 50 CGRCRTTLMYPHGAPSVKCAICDY 73 **********************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 142 aa Download sequence |
QIAAVEMAQL ICGGCRTLLM YTRNADTVRC SCCSTVNLVR PVNNIAHVNC GRCRTTLMYP 60 HGAPSVKCAI CDYITNITNT GINTMSPAPC PRPTSNESAY NASSASVPTP QPQNVTVVVE 120 NPMTVDEKGK LVSNVVVGIT PG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.2 | 1e-32 | LSD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5AG055120.6 |