PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5AG055120.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 186aa MW: 19713 Da PI: 8.401

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG055120.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.4	8.3e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+ Cr +L+YP GApsV+Ca+C ++ TRIDC5AG055120.4 7 CHRCRRVLAYPSGAPSVCCAMCRAI 31 **********************986 PP
2	zf-LSD1	39.6	8.3e-13	48	72	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV TRIDC5AG055120.4 48 CGGCRTLLMYTRNADTVRCSCCSTV 72 ***********************99 PP
3	zf-LSD1	44.8	2e-14	86	109	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd TRIDC5AG055120.4 86 CGRCRTTLMYPHGAPSVKCAICDY 109 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MQSQIVCHRC RRVLAYPSGA PSVCCAMCRA ITAVPPPAPA VEMAQLICGG CRTLLMYTRN 60 ADTVRCSCCS TVNLVRPVNN IAHVNCGRCR TTLMYPHGAP SVKCAICDYI TNITNTGINT 120 MSPAPCPRPT SNESAYNASS ASVVCPQTCL PTPQPQNVTV VVENPMTVDE KGKLVSNVVV 180 GITPGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-44	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG055120.4