PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5AG048680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 34543.6 Da PI: 8.6797 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++k +G g+W++ ++ g+ R++k+c++rw +yl TRIDC5AG048680.1 14 KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.2e-15 | 67 | 150 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT......................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......................................tWktIartmgkgRtlkqcksrwqky 47 rg+++ eEdel+++++ +lG++ +W++Ia +++ gRt++++k++w+++ TRIDC5AG048680.1 67 RGNFSDEEDELIIKLHSLLGNKyvhlsipyiapmnerssvlhawpcenialtvlflfderRWSLIAGRLP-GRTDNEIKNYWNTH 150 89********************************************************************.************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence |
MGRSPCCEKA HTNKGAWTKE EDDRLTAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SDEEDELIIK LHSLLGNKYV HLSIPYIAPM NERSSVLHAW PCENIALTVL 120 FLFDERRWSL IAGRLPGRTD NEIKNYWNTH IRRKLTSRGI DPVTHRAINS DHAASNITIS 180 FETAQRDDKG AVFRRDAEPT KVAAAAAAIT HVDHHHHHRS NPQMDWGQGK PLKCPDLNLD 240 LCISPPSHED PMVDTKPVVK REAGVGVGVV GLCFSCSMGL PRSVECKCSS FMGLRTAMLD 300 FRSIEMK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-89 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5AG048680.1 |