PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5AG042970.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 429aa MW: 44851 Da PI: 7.2941

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG042970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.1e-40	123	199	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+p v+v+g+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q TRIDC5AG042970.1 123 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPLVVVAGREMRFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQV 199 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MDWDLKMPGS WDLAELEHDG VPAMAAPAAA GIAAAAARGP PGRPECSVDL NLGGLGEFGP 60 AADGAMKQQQ PPVATAAANG PAASLSASAS NAAAVVPSAS PLKRPRPGAG GGGGAGAGHC 120 PSCAVDGCKA DLSKCRDYHR RHKVCEAHSK TPLVVVAGRE MRFCQQCSRF HLLAEFDEAK 180 RSCRKRLDGH NRRRRKPQVD SMTSGSFMTR QQGTRFASFS APRPESSWSG IIKSEDSNPY 240 YTTTHQINFA GSSSSYSKEG RRFPFLHEGD QMSFSTGAAA LEIPPVCQPL LKAVAPPPPP 300 ESSSSNKMFS DGQLTHMLDS DCALSLLSSP ANSSSVDVSR MVRPSEHIPS VPNLQQFGSS 360 SWFACSQASS AATGFAAFAG GMDGEQQLNA GGALVPSSND NEMNCHGIFH VGADGSSEGT 420 SPSLPFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MDWDLKMPGS WDLAELEHDG VPAMAAPAAA GIAAAAARGP PGRPECSVDL NLGGLGEFGP  60
AADGAMKQQQ PPVATAAANG PAASLSASAS NAAAVVPSAS PLKRPRPGAG GGGGAGAGHC  120
PSCAVDGCKA DLSKCRDYHR RHKVCEAHSK TPLVVVAGRE MRFCQQCSRF HLLAEFDEAK  180
RSCRKRLDGH NRRRRKPQVD SMTSGSFMTR QQGTRFASFS APRPESSWSG IIKSEDSNPY  240
YTTTHQINFA GSSSSYSKEG RRFPFLHEGD QMSFSTGAAA LEIPPVCQPL LKAVAPPPPP  300
ESSSSNKMFS DGQLTHMLDS DCALSLLSSP ANSSSVDVSR MVRPSEHIPS VPNLQQFGSS  360
SWFACSQASS AATGFAAFAG GMDGEQQLNA GGALVPSSND NEMNCHGIFH VGADGSSEGT  420
SPSLPFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	107	KRPRP
2	180	197	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-40	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG042970.1