PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5AG038950.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 26044.6 Da PI: 4.353 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.8e-19 | 33 | 86 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k TRIDC5AG038950.6 33 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 86 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 133.4 | 8.3e-43 | 32 | 124 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++e+L +e+++ TRIDC5AG038950.6 32 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYNALRHSYDALRVDHDALRRDKEALLAEVRA 124 69*************************************************************************************999875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence |
MDYGVVGMEA DGDAEEEMMA CGGGGGGCGG GEKKRRLSAE QVRALERSFE VENKLEPERK 60 ARLARDLGLQ PRQVAVWFQN RRARWKTKQL ERDYNALRHS YDALRVDHDA LRRDKEALLA 120 EVRAAHGKLG DEEAAASFTS VKEEPAASDG PPPAGMGSSD SDSSGVLNDT DATGATPTEE 180 APAPDMGTLL GGPGAAGAAA AGHGQVFLHG NFLKVEEDET GFLDDEEPCG GFFADEPPLA 240 WWTE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 58 | 64 | ERKARLA |
2 | 81 | 89 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-42 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5AG038950.6 |