PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC5AG020080.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GATA

Protein Properties

Length: 407aa MW: 44709.8 Da PI: 9.6338

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020080.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	35.7	1.2e-11	71	105	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++ +Tp+ R+gp g tLCnaCG+ y k+g+ TRIDC5AG020080.2 71 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 105 99******************************997 PP
2	GATA	32.3	1.4e-10	161	195	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++ plW +g+ g +++C aCG++y+k +l TRIDC5AG020080.2 161 CLHCGSSDPPLWIEGSMGRREVCTACGMRYKKGRL 195 99******************************986 PP
3	GATA	55.4	8.4e-18	265	299	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++Tp+WR+gp g tLCnaCG++yr +l TRIDC5AG020080.2 265 CQHCGSSETPQWREGPKGRATLCNACGVRYRQGRL 299 *******************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
AVPRKARSYL PRNVPSAWWS LRIPFIQPLP PAGDPANEEE GRRFPRTQRV QVAPSLDPGT 60 ADKPPKRLKR CLHCKAVETP QRRSGPMGRG TLCNACGVWY SKNGTLPEHR PVASPIVDSP 120 LESPIWEPEV PGAIYLVRKS ATERMPPRTE AAPAPRPGTS CLHCGSSDPP LWIEGSMGRR 180 EVCTACGMRY KKGRLLPECR PAECSVTDSQ QESPVINSPP ESPIWEPEAP PSVHLPRKPS 240 KKKKRRRSRS EAPSAPWPAN KGKRCQHCGS SETPQWREGP KGRATLCNAC GVRYRQGRLL 300 PEYRPVASPT FVPTKHANTH RKVLQLHRTR QSNDEHPSPL PADSVTNLPP IRNELPTTST 360 AGLASEDPTD APGYTDNPIN VPSSLDSLLL DGPSAPLIVE SEDFAIS

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

AVPRKARSYL PRNVPSAWWS LRIPFIQPLP PAGDPANEEE GRRFPRTQRV QVAPSLDPGT  60
ADKPPKRLKR CLHCKAVETP QRRSGPMGRG TLCNACGVWY SKNGTLPEHR PVASPIVDSP  120
LESPIWEPEV PGAIYLVRKS ATERMPPRTE AAPAPRPGTS CLHCGSSDPP LWIEGSMGRR  180
EVCTACGMRY KKGRLLPECR PAECSVTDSQ QESPVINSPP ESPIWEPEAP PSVHLPRKPS  240
KKKKRRRSRS EAPSAPWPAN KGKRCQHCGS SETPQWREGP KGRATLCNAC GVRYRQGRLL  300
PEYRPVASPT FVPTKHANTH RKVLQLHRTR QSNDEHPSPL PADSVTNLPP IRNELPTTST  360
AGLASEDPTD APGYTDNPIN VPSSLDSLLL DGPSAPLIVE SEDFAIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	246	KKKKRR
2	241	247	KKKKRRR
3	242	248	KKKKRRR
4	242	247	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	1e-30	GATA family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020080.2