PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG017230.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 697aa MW: 79805.3 Da PI: 7.9326

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG017230.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	578	601	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r TRIDC5AG017230.6 578 FPCDieGCDMSFSSQQDLLLHKRD 601 789999***************985 PP
2	zf-C2H2	11.5	0.00095	661	687	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC5AG017230.6 661 YECMvpGCGQTFRFVSDFSRHKRKtgH 687 788888****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MHVFCLEHAL GTWTQLQKIG GANVMLLCHP EYPRAESAAK FIAEELGLKP DWKDVAFEEA 60 TDDDIRRIQL ALHDEDAEPA SNDWAVKMGI NIYYSAKQSK SPLYSKQIPY NSIIYEAFGQ 120 ENPDNLTDYG RQRSGVTKKR VAGCWCGKVW MSNQVHPFLV REHEEHNRAI VCSKVMLGAN 180 YHEIVYDEPS LTCNTMVNCS PSKRISRRKG RDSIEKSGAR KKRCSANDEA TLHCSSLGMN 240 SKTISDQPRN FDDHDKHEGG KITEAPSTQQ YQQYTLQSMN MKSSSNKPKD DKGNRNFLDL 300 YDEANDVDCW FNIDSGDNAA IRHLEDSRQQ ELGTVKAKSP GKLQGNMRKS SKCKARDDSL 360 NGDKKVQKMN KKSISRKQKD VEINTQFREE YDEDNNWEEV PEGKDHDVKV ESRAKTRSGE 420 DNKRNNNSHE LHDEDNDMDC WHDIHGRDNA TMGNLDNSPV QRLEAAEVKS GGKLHCCKRK 480 SSKGKAKDDY SYGDEKLQML NIESISRKQK SDSQFDEGCD RDNALDSLLN DVDEAARENC 540 YEVREEEMDG MEVKPRGKMQ TGKRKTSRCQ AGDKAAKFPC DIEGCDMSFS SQQDLLLHKR 600 DICPVKGCKK KFFCHKYLLQ HRKVHMDERP LNCEWKGCKK TFKWPWARTE HMRVHTGVRP 660 YECMVPGCGQ TFRFVSDFSR HKRKTGHSSG KKNKEST

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MHVFCLEHAL GTWTQLQKIG GANVMLLCHP EYPRAESAAK FIAEELGLKP DWKDVAFEEA  60
TDDDIRRIQL ALHDEDAEPA SNDWAVKMGI NIYYSAKQSK SPLYSKQIPY NSIIYEAFGQ  120
ENPDNLTDYG RQRSGVTKKR VAGCWCGKVW MSNQVHPFLV REHEEHNRAI VCSKVMLGAN  180
YHEIVYDEPS LTCNTMVNCS PSKRISRRKG RDSIEKSGAR KKRCSANDEA TLHCSSLGMN  240
SKTISDQPRN FDDHDKHEGG KITEAPSTQQ YQQYTLQSMN MKSSSNKPKD DKGNRNFLDL  300
YDEANDVDCW FNIDSGDNAA IRHLEDSRQQ ELGTVKAKSP GKLQGNMRKS SKCKARDDSL  360
NGDKKVQKMN KKSISRKQKD VEINTQFREE YDEDNNWEEV PEGKDHDVKV ESRAKTRSGE  420
DNKRNNNSHE LHDEDNDMDC WHDIHGRDNA TMGNLDNSPV QRLEAAEVKS GGKLHCCKRK  480
SSKGKAKDDY SYGDEKLQML NIESISRKQK SDSQFDEGCD RDNALDSLLN DVDEAARENC  540
YEVREEEMDG MEVKPRGKMQ TGKRKTSRCQ AGDKAAKFPC DIEGCDMSFS SQQDLLLHKR  600
DICPVKGCKK KFFCHKYLLQ HRKVHMDERP LNCEWKGCKK TFKWPWARTE HMRVHTGVRP  660
YECMVPGCGQ TFRFVSDFSR HKRKTGHSSG KKNKEST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	223	RRKGRDSIEKSGARKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	4e-56	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG017230.6