PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG017230.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1179aa MW: 132286 Da PI: 7.267

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG017230.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	1060	1083	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r TRIDC5AG017230.5 1060 FPCDieGCDMSFSSQQDLLLHKRD 1083 789999***************985 PP
2	zf-C2H2	10.6	0.0017	1143	1169	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC5AG017230.5 1143 YECMvpGCGQTFRFVSDFSRHKRKtgH 1169 788888****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1179 aa Download sequence
LSVGVPCCSR LVQNPGEFVI TFPGAYHCGF SHGFNCGEAT NIATPLWLQV AKEAAIRRAS 60 TNCGPMISHY QLLYELALSL SQREPKDFHT LPRSSRLRDK KKKDEGDTMV KEKFVGSVIE 120 NNNLLSILLD KSSCIIVPET PFPPTSFPTM MEPELTVKQS LTGGHCSISQ QAVHNMSVDV 180 ALDKSIVVEN MSHSQSVTEA SLSAYNRRKL YETKYGELGT AAFCLSPSKL QSGVTDKDKR 240 GGLLDQGRLP CVQCGILSFA CVAIIQPREA AVQFVLSREG ISSSAKPGEV SESDGISNWI 300 TNNIEMVPQQ GQASEALTVS LAHVSDRCGQ LYSRNNNGST SALGLLASTY GSSDSEEESN 360 QGKNNQLLET SVSFSSTVQR QRSNSHLYEE CCEAKTTTSL LKSIEDNSTT ITRCGRDTDI 420 NHLAKLREQG TTYDQCSVYV DLANDLTISG VKAYSDTHVT TAKSSIEPDV LTQLKYNNDS 480 CRMHVFCLEH ALGTWTQLQK IGGANVMLLC HPEYPRAESA AKFIAEELGL KPDWKDVAFE 540 EATDDDIRRI QLALHDEDAE PASNDWAVKM GINIYYSAKQ SKSPLYSKQI PYNSIIYEAF 600 GQENPDNLTD YGRQRSGVTK KRVAGCWCGK VWMSNQVHPF LVREHEEHNR AIVCSKVMLG 660 ANYHEIVYDE PSLTCNTMVN CSPSKRISRR KGRDSIEKSG ARKKRCSAND EATLHCSSLG 720 MNSKTISDQP RNFDDHDKHE GGKITEAPST QQYQQYTLQS MNMKSSSNKP KDDKGNRNFL 780 DLYDEANDVD CWFNIDSGDN AAIRHLEDSR QQELGTVKAK SPGKLQGNMR KSSKCKARDD 840 SLNGDKKVQK MNKKSISRKQ KDVEINTQFR EEYDEDNNWE EVPEGKDHDV KVESRAKTRS 900 GEDNKRNNNS HELHDEDNDM DCWHDIHGRD NATMGNLDNS PVQRLEAAEV KSGGKLHCCK 960 RKSSKGKAKD DYSYGDEKLQ MLNIESISRK QKSDSQFDEG CDRDNALDSL LNDVDEAARE 1020 NCYEVREEEM DGMEVKPRGK MQTGKRKTSR CQAGDKAAKF PCDIEGCDMS FSSQQDLLLH 1080 KRDICPVKGC KKKFFCHKYL LQHRKVHMDE RPLNCEWKGC KKTFKWPWAR TEHMRVHTGV 1140 RPYECMVPGC GQTFRFVSDF SRHKRKTGHS SGKKNKEST

Sequence ? help Back to Top

Protein Sequence Length: 1179 aa Download sequence

LSVGVPCCSR LVQNPGEFVI TFPGAYHCGF SHGFNCGEAT NIATPLWLQV AKEAAIRRAS  60
TNCGPMISHY QLLYELALSL SQREPKDFHT LPRSSRLRDK KKKDEGDTMV KEKFVGSVIE  120
NNNLLSILLD KSSCIIVPET PFPPTSFPTM MEPELTVKQS LTGGHCSISQ QAVHNMSVDV  180
ALDKSIVVEN MSHSQSVTEA SLSAYNRRKL YETKYGELGT AAFCLSPSKL QSGVTDKDKR  240
GGLLDQGRLP CVQCGILSFA CVAIIQPREA AVQFVLSREG ISSSAKPGEV SESDGISNWI  300
TNNIEMVPQQ GQASEALTVS LAHVSDRCGQ LYSRNNNGST SALGLLASTY GSSDSEEESN  360
QGKNNQLLET SVSFSSTVQR QRSNSHLYEE CCEAKTTTSL LKSIEDNSTT ITRCGRDTDI  420
NHLAKLREQG TTYDQCSVYV DLANDLTISG VKAYSDTHVT TAKSSIEPDV LTQLKYNNDS  480
CRMHVFCLEH ALGTWTQLQK IGGANVMLLC HPEYPRAESA AKFIAEELGL KPDWKDVAFE  540
EATDDDIRRI QLALHDEDAE PASNDWAVKM GINIYYSAKQ SKSPLYSKQI PYNSIIYEAF  600
GQENPDNLTD YGRQRSGVTK KRVAGCWCGK VWMSNQVHPF LVREHEEHNR AIVCSKVMLG  660
ANYHEIVYDE PSLTCNTMVN CSPSKRISRR KGRDSIEKSG ARKKRCSAND EATLHCSSLG  720
MNSKTISDQP RNFDDHDKHE GGKITEAPST QQYQQYTLQS MNMKSSSNKP KDDKGNRNFL  780
DLYDEANDVD CWFNIDSGDN AAIRHLEDSR QQELGTVKAK SPGKLQGNMR KSSKCKARDD  840
SLNGDKKVQK MNKKSISRKQ KDVEINTQFR EEYDEDNNWE EVPEGKDHDV KVESRAKTRS  900
GEDNKRNNNS HELHDEDNDM DCWHDIHGRD NATMGNLDNS PVQRLEAAEV KSGGKLHCCK  960
RKSSKGKAKD DYSYGDEKLQ MLNIESISRK QKSDSQFDEG CDRDNALDSL LNDVDEAARE  1020
NCYEVREEEM DGMEVKPRGK MQTGKRKTSR CQAGDKAAKF PCDIEGCDMS FSSQQDLLLH  1080
KRDICPVKGC KKKFFCHKYL LQHRKVHMDE RPLNCEWKGC KKTFKWPWAR TEHMRVHTGV  1140
RPYECMVPGC GQTFRFVSDF SRHKRKTGHS SGKKNKEST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	104	RDKKKKD
2	689	705	RRKGRDSIEKSGARKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-113	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG017230.5