PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG017230.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1071aa MW: 120325 Da PI: 7.0516

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG017230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	952	975	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r TRIDC5AG017230.1 952 FPCDieGCDMSFSSQQDLLLHKRD 975 789999***************985 PP
2	zf-C2H2	10.8	0.0016	1035	1061	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC5AG017230.1 1035 YECMvpGCGQTFRFVSDFSRHKRKtgH 1061 788888****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1071 aa Download sequence
MVKEKFVGSV IENNNLLSIL LDKSSCIIVP ETPFPPTSFP TMMEPELTVK QSLTGGHCSI 60 SQQAVHNMSV DVALDKSIVV ENMSHSQSVT EASLSAYNRR KLYETKYGEL GTAAFCLSPS 120 KLQSGVTDKD KRGGLLDQGR LPCVQCGILS FACVAIIQPR EAAVQFVLSR EGISSSAKPG 180 EVSESDGISN WITNNIEMVP QQGQASEALT VSLAHVSDRC GQLYSRNNNG STSALGLLAS 240 TYGSSDSEEE SNQGKNNQLL ETSVSFSSTV QRQRSNSHLY EECCEAKTTT SLLKSIEDNS 300 TTITRCGRDT DINHLAKLRE QGTTYDQCSV YVDLANDLTI SGVKAYSDTH VTTAKSSIEP 360 DVLTQLKYNN DSCRMHVFCL EHALGTWTQL QKIGGANVML LCHPEYPRAE SAAKFIAEEL 420 GLKPDWKDVA FEEATDDDIR RIQLALHDED AEPASNDWAV KMGINIYYSA KQSKSPLYSK 480 QIPYNSIIYE AFGQENPDNL TDYGRQRSGV TKKRVAGCWC GKVWMSNQVH PFLVREHEEH 540 NRAIVCSKVM LGANYHEIVY DEPSLTCNTM VNCSPSKRIS RRKGRDSIEK SGARKKRCSA 600 NDEATLHCSS LGMNSKTISD QPRNFDDHDK HEGGKITEAP STQQYQQYTL QSMNMKSSSN 660 KPKDDKGNRN FLDLYDEAND VDCWFNIDSG DNAAIRHLED SRQQELGTVK AKSPGKLQGN 720 MRKSSKCKAR DDSLNGDKKV QKMNKKSISR KQKDVEINTQ FREEYDEDNN WEEVPEGKDH 780 DVKVESRAKT RSGEDNKRNN NSHELHDEDN DMDCWHDIHG RDNATMGNLD NSPVQRLEAA 840 EVKSGGKLHC CKRKSSKGKA KDDYSYGDEK LQMLNIESIS RKQKSDSQFD EGCDRDNALD 900 SLLNDVDEAA RENCYEVREE EMDGMEVKPR GKMQTGKRKT SRCQAGDKAA KFPCDIEGCD 960 MSFSSQQDLL LHKRDICPVK GCKKKFFCHK YLLQHRKVHM DERPLNCEWK GCKKTFKWPW 1020 ARTEHMRVHT GVRPYECMVP GCGQTFRFVS DFSRHKRKTG HSSGKKNKES T

Sequence ? help Back to Top

Protein Sequence Length: 1071 aa Download sequence

MVKEKFVGSV IENNNLLSIL LDKSSCIIVP ETPFPPTSFP TMMEPELTVK QSLTGGHCSI  60
SQQAVHNMSV DVALDKSIVV ENMSHSQSVT EASLSAYNRR KLYETKYGEL GTAAFCLSPS  120
KLQSGVTDKD KRGGLLDQGR LPCVQCGILS FACVAIIQPR EAAVQFVLSR EGISSSAKPG  180
EVSESDGISN WITNNIEMVP QQGQASEALT VSLAHVSDRC GQLYSRNNNG STSALGLLAS  240
TYGSSDSEEE SNQGKNNQLL ETSVSFSSTV QRQRSNSHLY EECCEAKTTT SLLKSIEDNS  300
TTITRCGRDT DINHLAKLRE QGTTYDQCSV YVDLANDLTI SGVKAYSDTH VTTAKSSIEP  360
DVLTQLKYNN DSCRMHVFCL EHALGTWTQL QKIGGANVML LCHPEYPRAE SAAKFIAEEL  420
GLKPDWKDVA FEEATDDDIR RIQLALHDED AEPASNDWAV KMGINIYYSA KQSKSPLYSK  480
QIPYNSIIYE AFGQENPDNL TDYGRQRSGV TKKRVAGCWC GKVWMSNQVH PFLVREHEEH  540
NRAIVCSKVM LGANYHEIVY DEPSLTCNTM VNCSPSKRIS RRKGRDSIEK SGARKKRCSA  600
NDEATLHCSS LGMNSKTISD QPRNFDDHDK HEGGKITEAP STQQYQQYTL QSMNMKSSSN  660
KPKDDKGNRN FLDLYDEAND VDCWFNIDSG DNAAIRHLED SRQQELGTVK AKSPGKLQGN  720
MRKSSKCKAR DDSLNGDKKV QKMNKKSISR KQKDVEINTQ FREEYDEDNN WEEVPEGKDH  780
DVKVESRAKT RSGEDNKRNN NSHELHDEDN DMDCWHDIHG RDNATMGNLD NSPVQRLEAA  840
EVKSGGKLHC CKRKSSKGKA KDDYSYGDEK LQMLNIESIS RKQKSDSQFD EGCDRDNALD  900
SLLNDVDEAA RENCYEVREE EMDGMEVKPR GKMQTGKRKT SRCQAGDKAA KFPCDIEGCD  960
MSFSSQQDLL LHKRDICPVK GCKKKFFCHK YLLQHRKVHM DERPLNCEWK GCKKTFKWPW  1020
ARTEHMRVHT GVRPYECMVP GCGQTFRFVS DFSRHKRKTG HSSGKKNKES T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	581	597	RRKGRDSIEKSGARKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-65	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG017230.1