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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC4BG058410.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 299aa MW: 31662.3 Da PI: 8.5743 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 43.8 | 4.4e-14 | 111 | 162 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+ +N+ ++ Lr l+P++ + ++ + a+++ A++Y+k+L+
TRIDC4BG058410.1 111 QRMTHIAVERNRRRLMNDHLASLRALIPSD---YIPRGDQATVVGGAIDYVKQLE 162
79****************************...9*******************96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 299 aa Download sequence |
SSRLMVVVVV MDQCWADQAA ASASAAQVPF LALLQGAAMG DGRPGVKRES YGAAACRPAA 60 SDVDLLESCV TQLPVPPVVE APAAKRRKRP RARPRAPPPE KRKKPEEAEC QRMTHIAVER 120 NRRRLMNDHL ASLRALIPSD YIPRGDQATV VGGAIDYVKQ LEQQLVALQA LAAAQRGEGP 180 VGTAATAASD GVFVSPQYTS FSQAGGVGSG VDVEAMAAVG GHVRLRVAGR RWPGRLVRTV 240 AAMENLRMAV LHLAVTSVGH DAVVYCFNLK MEDGCEVSTA DEVATVVHQI FAYAAGSCC |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 85 | 103 | KRRKRPRARPRAPPPEKRK |
| 2 | 85 | 104 | KRRKRPRARPRAPPPEKRKK |
| 3 | 86 | 104 | KRRKRPRARPRAPPPEKRK |
| 4 | 86 | 105 | KRRKRPRARPRAPPPEKRKK |
| 5 | 87 | 105 | KRRKRPRARPRAPPPEKRK |
| 6 | 87 | 106 | KRRKRPRARPRAPPPEKRKK |
| 7 | 91 | 104 | RARPRAPPPEKRKK |
| 8 | 112 | 123 | RMTHIAVERNRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G01460.1 | 2e-45 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC4BG058410.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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