PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG054710.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 674aa MW: 74863.6 Da PI: 6.4655

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG054710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.2	1.4e-27	360	410	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+k+F++++k+AAk+Lgvc+T+LKriCR++GI+RWP+Rkik++ TRIDC4BG054710.1 360 EKTVSLQELRKHFAGSLKEAAKNLGVCPTTLKRICRHHGIDRWPSRKIKKV 410 689**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
VELVMTTQKI NYNAEIDNIC NALKEVDLRG SDVSSDPRAQ VIDASHRAIV PELVHVLRAV 60 CETHKLPLAQ TWIPCVCQAK RASRHSDEKY KYCVSTVDEA CYVRDAAMTG FHQACSEHHL 120 FRGEGVVGTA LGTNEPCFCP DITAYSKVQY PLSHYAKLFG LRAAVAIRLR SVKTGSMDLI 180 LEFFLPSNCI NSEEQGSMLN SLSNTIQQAS CTLRVVGVKE LANDGSPESS SPTPPEVCDK 240 PAEILDELHT SGINIPARTR SVDASEEVSS WIASLVDVQN SGAQGETDCG LPFGLRKQED 300 EGFSVTAGWP TSPVLVPEDK SFFPGFTKHE EYEVKGSPFS SDRSLSNSDK VIEKRRTKIE 360 KTVSLQELRK HFAGSLKEAA KNLGVCPTTL KRICRHHGID RWPSRKIKKV GHSLKKLQMV 420 IDSVHGAEGT VRLSSLYENF TKTTWSEREL QGDLSYPASE QKVQLEPSVP DRQCESRFSP 480 HTSGSNSLSP TYSQSSNSSL GCSSEPKPQQ QQSSAPQLAV KQEFFMEENQ SSTQMKAASH 540 DELRLFTEEK PVTLCRSQSH MLFSEHKPMA NMSGMQEAKP DSLKIKAMYG EERCIFRLQP 600 SWGFEKLKEE IAKRFGISQE VYDLKYLDDE SEWVLLTCDA DLLECIDVYK SSSAKTVRIS 660 VNPAVQPILR GSFG

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

VELVMTTQKI NYNAEIDNIC NALKEVDLRG SDVSSDPRAQ VIDASHRAIV PELVHVLRAV  60
CETHKLPLAQ TWIPCVCQAK RASRHSDEKY KYCVSTVDEA CYVRDAAMTG FHQACSEHHL  120
FRGEGVVGTA LGTNEPCFCP DITAYSKVQY PLSHYAKLFG LRAAVAIRLR SVKTGSMDLI  180
LEFFLPSNCI NSEEQGSMLN SLSNTIQQAS CTLRVVGVKE LANDGSPESS SPTPPEVCDK  240
PAEILDELHT SGINIPARTR SVDASEEVSS WIASLVDVQN SGAQGETDCG LPFGLRKQED  300
EGFSVTAGWP TSPVLVPEDK SFFPGFTKHE EYEVKGSPFS SDRSLSNSDK VIEKRRTKIE  360
KTVSLQELRK HFAGSLKEAA KNLGVCPTTL KRICRHHGID RWPSRKIKKV GHSLKKLQMV  420
IDSVHGAEGT VRLSSLYENF TKTTWSEREL QGDLSYPASE QKVQLEPSVP DRQCESRFSP  480
HTSGSNSLSP TYSQSSNSSL GCSSEPKPQQ QQSSAPQLAV KQEFFMEENQ SSTQMKAASH  540
DELRLFTEEK PVTLCRSQSH MLFSEHKPMA NMSGMQEAKP DSLKIKAMYG EERCIFRLQP  600
SWGFEKLKEE IAKRFGISQE VYDLKYLDDE SEWVLLTCDA DLLECIDVYK SSSAKTVRIS  660
VNPAVQPILR GSFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-150	Nin-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG054710.1