PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC4BG054360.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 199aa MW: 21544.7 Da PI: 10.9297

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG054360.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ l+ ++k +G g+Wk ++ + g++R++k+c++rw++yl TRIDC4BG054360.2 14 RGAWTSKEDQTLASYIKAHGEGRWKEVPLKAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	49.4	1e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +++el+v+++++lG++ W++Ia +++ gRt++++k++w++ TRIDC4BG054360.2 67 RGNISDDDEELIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 78999***************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MGMRTCSAKE GVKRGAWTSK EDQTLASYIK AHGEGRWKEV PLKAGLRRCG KSCRLRWLNY 60 LRPSIKRGNI SDDDEELIVR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS TLGRKALPAR 120 LDTTRTVATP CPSASSGSST GASTAWLSSN CGDGTSAKAA GLLSSASVWV PKPVRCTGGL 180 FLSRDAPPPP LLVRTLPSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-55	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG054360.2