PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG053560.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1163aa MW: 128950 Da PI: 5.0669

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG053560.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	1053	1078	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4BG053560.6 1053 FQCEidFCDMTFESRADLRAHERNiC 1078 89********************9877 PP
2	zf-C2H2	10.9	0.0015	1106	1130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4BG053560.6 1106 FKCPweGCGMTFKWLWAQTEHIRVH 1130 89*********************99 PP
3	zf-C2H2	11.3	0.0011	1136	1162	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC4BG053560.6 1136 YECLveGCGQTFRYVSDYSRHRRKfnH 1162 889999*****************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence
AVGLVQHPGE FVVTFPRAYH VGFSHGFNCG EAANFATPQW LKFAKEAAVR RAVMNYLPML 60 SHQQLLYLLA VSFISRTPRE LLYGIRTSRL RDRRKEEREL LVKREFLQDM ISENELLCSF 120 LKKKLIDNAV LWEPDLLPSS TALHSCSSGP KAPLKVDDVH SIESVPKENC SSDDIASRAG 180 IQPKCMSMDS KSSDAMSTSE AQKLDTDTDD DGDLPFDLSI DSGSLTCVAC GILGFPFMAI 240 LQPSKKALED MSLVDIERFK LNCEKENHSN AIPCSPDDGN SGHPVIAKRP SSPVAESNFS 300 HQNAESDKDG VGLDGPLLPH NNSSHSCSSE NTLNPCINTE TTETKIPSAR FGIEFSKQTG 360 RGDIDAQATE SCGNTVDWNI TSAFVRPRIF CLQHALEIEE LLEGRGGVHA LIICHADYTK 420 LKALAISIAE EIEFQFDCKD VPLVNASKSD LHLINISIDD EGYKEDERDW TTQMGLNMKY 480 FAKLRKETPG CQEQPPLSFW KRLDISDKPL PISVVPNLKW LCRRARTPYR VVGYAANRNA 540 TVGPDVVSPA VTKAEMGTSG NAYENAKEQR TAEQDALLEP SRLQEADDVA DMHTCSEDID 600 QDMHCLIGSK RQRTAEQDAP LQPSRLQEAD DVVDMHTCSV DNDQDMHRLI GIPVAVAEYP 660 MVHQVCEGTV SVSTCELDDL VSASTSDDSV CSAYSQDSPG VSDDFTTEQK CVQSDELTSS 720 VAMSVQQFLL DESMTAEDSS NQEKLGSYNV TSECKDKQLQ VQQEQENIEL CNNAGRNMAT 780 VVQVDSSHFP DKAVNLKSAI PTESQHEYPK RDAIVLEGMQ AALTTVVSGE NRNSVHTELD 840 SLGILLGALA EESILADVPG KDEVDDASLT LMTLASIDQS AGDVAHNEVI ETSSSSIGAS 900 LSCRGRTLTN LASDGSLRIQ NAEIQNKQEN AEEVDAWNCQ GWKSSRGVLD SSANSLSETG 960 KSSGTPNTYQ PDILSRSIGS SKRTSIICYV RRKRKQKRKR ESQSVGSFAR APCERLRPRT 1020 KRAVIEEPAE QIETAKPSAA ATKGKRSKVV ELFQCEIDFC DMTFESRADL RAHERNICTD 1080 ESCGKRFQSH KYLKRHQCVH RDERPFKCPW EGCGMTFKWL WAQTEHIRVH TGERPYECLV 1140 EGCGQTFRYV SDYSRHRRKF NHY

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence

AVGLVQHPGE FVVTFPRAYH VGFSHGFNCG EAANFATPQW LKFAKEAAVR RAVMNYLPML  60
SHQQLLYLLA VSFISRTPRE LLYGIRTSRL RDRRKEEREL LVKREFLQDM ISENELLCSF  120
LKKKLIDNAV LWEPDLLPSS TALHSCSSGP KAPLKVDDVH SIESVPKENC SSDDIASRAG  180
IQPKCMSMDS KSSDAMSTSE AQKLDTDTDD DGDLPFDLSI DSGSLTCVAC GILGFPFMAI  240
LQPSKKALED MSLVDIERFK LNCEKENHSN AIPCSPDDGN SGHPVIAKRP SSPVAESNFS  300
HQNAESDKDG VGLDGPLLPH NNSSHSCSSE NTLNPCINTE TTETKIPSAR FGIEFSKQTG  360
RGDIDAQATE SCGNTVDWNI TSAFVRPRIF CLQHALEIEE LLEGRGGVHA LIICHADYTK  420
LKALAISIAE EIEFQFDCKD VPLVNASKSD LHLINISIDD EGYKEDERDW TTQMGLNMKY  480
FAKLRKETPG CQEQPPLSFW KRLDISDKPL PISVVPNLKW LCRRARTPYR VVGYAANRNA  540
TVGPDVVSPA VTKAEMGTSG NAYENAKEQR TAEQDALLEP SRLQEADDVA DMHTCSEDID  600
QDMHCLIGSK RQRTAEQDAP LQPSRLQEAD DVVDMHTCSV DNDQDMHRLI GIPVAVAEYP  660
MVHQVCEGTV SVSTCELDDL VSASTSDDSV CSAYSQDSPG VSDDFTTEQK CVQSDELTSS  720
VAMSVQQFLL DESMTAEDSS NQEKLGSYNV TSECKDKQLQ VQQEQENIEL CNNAGRNMAT  780
VVQVDSSHFP DKAVNLKSAI PTESQHEYPK RDAIVLEGMQ AALTTVVSGE NRNSVHTELD  840
SLGILLGALA EESILADVPG KDEVDDASLT LMTLASIDQS AGDVAHNEVI ETSSSSIGAS  900
LSCRGRTLTN LASDGSLRIQ NAEIQNKQEN AEEVDAWNCQ GWKSSRGVLD SSANSLSETG  960
KSSGTPNTYQ PDILSRSIGS SKRTSIICYV RRKRKQKRKR ESQSVGSFAR APCERLRPRT  1020
KRAVIEEPAE QIETAKPSAA ATKGKRSKVV ELFQCEIDFC DMTFESRADL RAHERNICTD  1080
ESCGKRFQSH KYLKRHQCVH RDERPFKCPW EGCGMTFKWL WAQTEHIRVH TGERPYECLV  1140
EGCGQTFRYV SDYSRHRRKF NHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	990	997	VRRKRKQK
2	992	1001	RKRKQKRKRE
3	994	1003	RKRKQKRKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	2e-51	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG053560.6