PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG053560.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1110aa MW: 123181 Da PI: 4.9213

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG053560.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	1000	1025	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4BG053560.5 1000 FQCEidFCDMTFESRADLRAHERNiC 1025 89********************9877 PP
2	zf-C2H2	11	0.0014	1053	1077	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4BG053560.5 1053 FKCPweGCGMTFKWLWAQTEHIRVH 1077 89*********************99 PP
3	zf-C2H2	11.3	0.001	1083	1109	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC4BG053560.5 1083 YECLveGCGQTFRYVSDYSRHRRKfnH 1109 889999*****************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1110 aa Download sequence
MNYLPMLSHQ QLLYLLAVSF ISRTPRELLY GIRTSRLRDR RKEERELLVK REFLQDMISE 60 NELLCSFLKK KLIDNAVLWE PDLLPSSTAL HSCSSGPKAP LKVDDVHSIE SVPKENCSSD 120 DIASRAGIQP KCMSMDSKSS DAMSTSEAQK LDTDTDDDGD LPFDLSIDSG SLTCVACGIL 180 GFPFMAILQP SKKALEDMSL VDIERFKLNC EKENHSNAIP CSPDDGNSGH PVIAKRPSSP 240 VAESNFSHQN AESDKDGVGL DGPLLPHNNS SHSCSSENTL NPCINTETTE TKIPSARFGI 300 EFSKQTGRGD IDAQATESCG NTVDWNITSA FVRPRIFCLQ HALEIEELLE GRGGVHALII 360 CHADYTKLKA LAISIAEEIE FQFDCKDVPL VNASKSDLHL INISIDDEGY KEDERDWTTQ 420 MGLNMKYFAK LRKETPGCQE QPPLSFWKRL DISDKPLPIS VVPNLKWLCR RARTPYRVVG 480 YAANRNATVG PDVVSPAVTK AEMGTSGNAY ENAKEQRTAE QDALLEPSRL QEADDVADMH 540 TCSEDIDQDM HCLIGSKRQR TAEQDAPLQP SRLQEADDVV DMHTCSVDND QDMHRLIGIP 600 VAVAEYPMVH QVCEGTVSVS TCELDDLVSA STSDDSVCSA YSQDSPGVSD DFTTEQKCVQ 660 SDELTSSVAM SVQQFLLDES MTAEDSSNQE KLGSYNVTSE CKDKQLQVQQ EQENIELCNN 720 AGRNMATVVQ VDSSHFPDKA VNLKSAIPTE SQHEYPKRDA IVLEGMQAAL TTVVSGENRN 780 SVHTELDSLG ILLGALAEES ILADVPGKDE VDDASLTLMT LASIDQSAGD VAHNEVIETS 840 SSSIGASLSC RGRTLTNLAS DGSLRIQNAE IQNKQENAEE VDAWNCQGWK SSRGVLDSSA 900 NSLSETGKSS GTPNTYQPDI LSRSIGSSKR TSIICYVRRK RKQKRKRESQ SVGSFARAPC 960 ERLRPRTKRA VIEEPAEQIE TAKPSAAATK GKRSKVVELF QCEIDFCDMT FESRADLRAH 1020 ERNICTDESC GKRFQSHKYL KRHQCVHRDE RPFKCPWEGC GMTFKWLWAQ TEHIRVHTGE 1080 RPYECLVEGC GQTFRYVSDY SRHRRKFNHY

Sequence ? help Back to Top

Protein Sequence Length: 1110 aa Download sequence

MNYLPMLSHQ QLLYLLAVSF ISRTPRELLY GIRTSRLRDR RKEERELLVK REFLQDMISE  60
NELLCSFLKK KLIDNAVLWE PDLLPSSTAL HSCSSGPKAP LKVDDVHSIE SVPKENCSSD  120
DIASRAGIQP KCMSMDSKSS DAMSTSEAQK LDTDTDDDGD LPFDLSIDSG SLTCVACGIL  180
GFPFMAILQP SKKALEDMSL VDIERFKLNC EKENHSNAIP CSPDDGNSGH PVIAKRPSSP  240
VAESNFSHQN AESDKDGVGL DGPLLPHNNS SHSCSSENTL NPCINTETTE TKIPSARFGI  300
EFSKQTGRGD IDAQATESCG NTVDWNITSA FVRPRIFCLQ HALEIEELLE GRGGVHALII  360
CHADYTKLKA LAISIAEEIE FQFDCKDVPL VNASKSDLHL INISIDDEGY KEDERDWTTQ  420
MGLNMKYFAK LRKETPGCQE QPPLSFWKRL DISDKPLPIS VVPNLKWLCR RARTPYRVVG  480
YAANRNATVG PDVVSPAVTK AEMGTSGNAY ENAKEQRTAE QDALLEPSRL QEADDVADMH  540
TCSEDIDQDM HCLIGSKRQR TAEQDAPLQP SRLQEADDVV DMHTCSVDND QDMHRLIGIP  600
VAVAEYPMVH QVCEGTVSVS TCELDDLVSA STSDDSVCSA YSQDSPGVSD DFTTEQKCVQ  660
SDELTSSVAM SVQQFLLDES MTAEDSSNQE KLGSYNVTSE CKDKQLQVQQ EQENIELCNN  720
AGRNMATVVQ VDSSHFPDKA VNLKSAIPTE SQHEYPKRDA IVLEGMQAAL TTVVSGENRN  780
SVHTELDSLG ILLGALAEES ILADVPGKDE VDDASLTLMT LASIDQSAGD VAHNEVIETS  840
SSSIGASLSC RGRTLTNLAS DGSLRIQNAE IQNKQENAEE VDAWNCQGWK SSRGVLDSSA  900
NSLSETGKSS GTPNTYQPDI LSRSIGSSKR TSIICYVRRK RKQKRKRESQ SVGSFARAPC  960
ERLRPRTKRA VIEEPAEQIE TAKPSAAATK GKRSKVVELF QCEIDFCDMT FESRADLRAH  1020
ERNICTDESC GKRFQSHKYL KRHQCVHRDE RPFKCPWEGC GMTFKWLWAQ TEHIRVHTGE  1080
RPYECLVEGC GQTFRYVSDY SRHRRKFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	937	944	VRRKRKQK
2	939	948	RKRKQKRKRE
3	941	950	RKRKQKRKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	8e-52	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG053560.5