PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG053560.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1332aa MW: 147585 Da PI: 5.3475

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG053560.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	1222	1247	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4BG053560.3 1222 FQCEidFCDMTFESRADLRAHERNiC 1247 89********************9877 PP
2	zf-C2H2	10.7	0.0017	1275	1299	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4BG053560.3 1275 FKCPweGCGMTFKWLWAQTEHIRVH 1299 89*********************99 PP
3	zf-C2H2	11.1	0.0013	1305	1331	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H TRIDC4BG053560.3 1305 YECLveGCGQTFRYVSDYSRHRRKfnH 1331 889999*****************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1332 aa Download sequence
KASADRPIYI EYANDVPGSG FAASAQSHRR PHKKRRREGA PVDEGEKATG WKLSCSPWNL 60 QAIARAPGSL TRFMPDDVPG VTSPMVYIGM LFSWFAWHIE DHELHSLNFL HTGAPKTWYA 120 VPGDRAAELE EVIRVHGYGG NPDRLASLAV LGEKTTLMSP EVIVASGLPC CRLVQHPGEF 180 VVTFPRAYHV GFSHGFNCGE AANFATPQWL KFAKEAAVRR AVMNYLPMLS HQQLLYLLAV 240 SFISRTPREL LYGIRTSRLR DRRKEERELL VKREFLQDMI SENELLCSFL KKKLIDNAVL 300 WEPDLLPSST ALHSCSSGPK APLKVDDVHS IESVPKENCS SDDIASRAGI QPKCMSMDSK 360 SSDAMSTSEA QKLDTDTDDD GDLPFDLSID SGSLTCVACG ILGFPFMAIL QPSKKALEDM 420 SLVDIERFKL NCEKENHSNA IPCSPDDGNS GHPVIAKRPS SPVAESNFSH QNAESDKDGV 480 GLDGPLLPHN NSSHSCSSEN TLNPCINTET TETKIPSARF GIEFSKQTGR GDIDAQATES 540 CGNTVDWNIT SAFVRPRIFC LQHALEIEEL LEGRGGVHAL IICHADYTKL KALAISIAEE 600 IEFQFDCKDV PLVNASKSDL HLINISIDDE GYKEDERDWT TQMGLNMKYF AKLRKETPGC 660 QEQPPLSFWK RLDISDKPLP ISVVPNLKWL CRRARTPYRV VGYAANRNAT VGPDVVSPAV 720 TKAEMGTSGN AYENAKEQRT AEQDALLEPS RLQEADDVAD MHTCSEDIDQ DMHCLIGSKR 780 QRTAEQDAPL QPSRLQEADD VVDMHTCSVD NDQDMHRLIG IPVAVAEYPM VHQVCEGTVS 840 VSTCELDDLV SASTSDDSVC SAYSQDSPGV SDDFTTEQKC VQSDELTSSV AMSVQQFLLD 900 ESMTAEDSSN QEKLGSYNVT SECKDKQLQV QQEQENIELC NNAGRNMATV VQVDSSHFPD 960 KAVNLKSAIP TESQHEYPKR DAIVLEGMQA ALTTVVSGEN RNSVHTELDS LGILLGALAE 1020 ESILADVPGK DEVDDASLTL MTLASIDQSA GDVAHNEVIE TSSSSIGASL SCRGRTLTNL 1080 ASDGSLRIQN AEIQNKQENA EEVDAWNCQG WKSSRGVLDS SANSLSETGK SSGTPNTYQP 1140 DILSRSIGSS KRTSIICYVR RKRKQKRKRE SQSVGSFARA PCERLRPRTK RAVIEEPAEQ 1200 IETAKPSAAA TKGKRSKVVE LFQCEIDFCD MTFESRADLR AHERNICTDE SCGKRFQSHK 1260 YLKRHQCVHR DERPFKCPWE GCGMTFKWLW AQTEHIRVHT GERPYECLVE GCGQTFRYVS 1320 DYSRHRRKFN HY

Sequence ? help Back to Top

Protein Sequence Length: 1332 aa Download sequence

KASADRPIYI EYANDVPGSG FAASAQSHRR PHKKRRREGA PVDEGEKATG WKLSCSPWNL  60
QAIARAPGSL TRFMPDDVPG VTSPMVYIGM LFSWFAWHIE DHELHSLNFL HTGAPKTWYA  120
VPGDRAAELE EVIRVHGYGG NPDRLASLAV LGEKTTLMSP EVIVASGLPC CRLVQHPGEF  180
VVTFPRAYHV GFSHGFNCGE AANFATPQWL KFAKEAAVRR AVMNYLPMLS HQQLLYLLAV  240
SFISRTPREL LYGIRTSRLR DRRKEERELL VKREFLQDMI SENELLCSFL KKKLIDNAVL  300
WEPDLLPSST ALHSCSSGPK APLKVDDVHS IESVPKENCS SDDIASRAGI QPKCMSMDSK  360
SSDAMSTSEA QKLDTDTDDD GDLPFDLSID SGSLTCVACG ILGFPFMAIL QPSKKALEDM  420
SLVDIERFKL NCEKENHSNA IPCSPDDGNS GHPVIAKRPS SPVAESNFSH QNAESDKDGV  480
GLDGPLLPHN NSSHSCSSEN TLNPCINTET TETKIPSARF GIEFSKQTGR GDIDAQATES  540
CGNTVDWNIT SAFVRPRIFC LQHALEIEEL LEGRGGVHAL IICHADYTKL KALAISIAEE  600
IEFQFDCKDV PLVNASKSDL HLINISIDDE GYKEDERDWT TQMGLNMKYF AKLRKETPGC  660
QEQPPLSFWK RLDISDKPLP ISVVPNLKWL CRRARTPYRV VGYAANRNAT VGPDVVSPAV  720
TKAEMGTSGN AYENAKEQRT AEQDALLEPS RLQEADDVAD MHTCSEDIDQ DMHCLIGSKR  780
QRTAEQDAPL QPSRLQEADD VVDMHTCSVD NDQDMHRLIG IPVAVAEYPM VHQVCEGTVS  840
VSTCELDDLV SASTSDDSVC SAYSQDSPGV SDDFTTEQKC VQSDELTSSV AMSVQQFLLD  900
ESMTAEDSSN QEKLGSYNVT SECKDKQLQV QQEQENIELC NNAGRNMATV VQVDSSHFPD  960
KAVNLKSAIP TESQHEYPKR DAIVLEGMQA ALTTVVSGEN RNSVHTELDS LGILLGALAE  1020
ESILADVPGK DEVDDASLTL MTLASIDQSA GDVAHNEVIE TSSSSIGASL SCRGRTLTNL  1080
ASDGSLRIQN AEIQNKQENA EEVDAWNCQG WKSSRGVLDS SANSLSETGK SSGTPNTYQP  1140
DILSRSIGSS KRTSIICYVR RKRKQKRKRE SQSVGSFARA PCERLRPRTK RAVIEEPAEQ  1200
IETAKPSAAA TKGKRSKVVE LFQCEIDFCD MTFESRADLR AHERNICTDE SCGKRFQSHK  1260
YLKRHQCVHR DERPFKCPWE GCGMTFKWLW AQTEHIRVHT GERPYECLVE GCGQTFRYVS  1320
DYSRHRRKFN HY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1159	1166	VRRKRKQK
2	1161	1170	RKRKQKRKRE
3	1163	1172	RKRKQKRKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-126	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG053560.3