PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4BG047950.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 100aa MW: 11247.8 Da PI: 9.4199 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.3 | 4.3e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva++ifs g+l+e+ss TRIDC4BG047950.2 10 RIENKTTRQVTFTKRRNGLLKKAYELSLLCDAEVALVIFSGGGRLFEFSS 59 8***********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence |
MGRGKVEIRR IENKTTRQVT FTKRRNGLLK KAYELSLLCD AEVALVIFSG GGRLFEFSSS 60 SCHDKACCYT CTHVGSPGRN QKASHFHDKL PRISEVEDQT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 1e-30 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4BG047950.2 |