PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG038170.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 433aa MW: 46080.6 Da PI: 8.5425

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG038170.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	190	213	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ s + +L+ H+ + H TRIDC4BG038170.1 190 FPCKVCGEVLSKPQQLELHQAMkH 213 89******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MAGGARCRAL LRGFLSLFFV MFLHIGHAGC CFSPGSASQQ HEEDDAGAAS SSSSSKRRKI 60 SPLAFSPAVS SSTGVEERAG ARRRARHVSS LATSLRCYIH RIFSSAGRKN SVPGGEEQDE 120 AVTTTLSSPL AQSVTQRQAS VVLSTPSSPC ASPFLSPMSP QSLSVTPLVP CSPLATRQLS 180 RSFAARGDLF PCKVCGEVLS KPQQLELHQA MKHSLSELTH LDSSMNIIRM IFLAGWGLSP 240 PGAGDPPAVS RILRIHHNPR ALSRFEEYRD LVRSRAARRC AGASGAVVEE RCIADGNERL 300 RFHCATMLCS LGAGVCGSPY CCTCTILRHG FAGKQADVDG IATYSSGWAA HASLPDEVER 360 EFAFLQVRRA MLVCRVVAGR VVRGGDGDGD KVAYDSMVPV PPGGGGRGGE DDAELLVFNP 420 RAVLPCFVIM YGS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MAGGARCRAL LRGFLSLFFV MFLHIGHAGC CFSPGSASQQ HEEDDAGAAS SSSSSKRRKI  60
SPLAFSPAVS SSTGVEERAG ARRRARHVSS LATSLRCYIH RIFSSAGRKN SVPGGEEQDE  120
AVTTTLSSPL AQSVTQRQAS VVLSTPSSPC ASPFLSPMSP QSLSVTPLVP CSPLATRQLS  180
RSFAARGDLF PCKVCGEVLS KPQQLELHQA MKHSLSELTH LDSSMNIIRM IFLAGWGLSP  240
PGAGDPPAVS RILRIHHNPR ALSRFEEYRD LVRSRAARRC AGASGAVVEE RCIADGNERL  300
RFHCATMLCS LGAGVCGSPY CCTCTILRHG FAGKQADVDG IATYSSGWAA HASLPDEVER  360
EFAFLQVRRA MLVCRVVAGR VVRGGDGDGD KVAYDSMVPV PPGGGGRGGE DDAELLVFNP  420
RAVLPCFVIM YGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	2e-57	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG038170.1