PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG013280.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 683aa MW: 75700.1 Da PI: 7.3521

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG013280.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.3e-28	329	379	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ TRIDC4BG013280.12 329 EKHVSLKILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 379 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
FSVPIQACTH MICKPKAFLI ILIVTFVILQ SVHLSTVRAR THPQSLTRNQ QSVLTEILDV 60 LRAVCHTHML PLALAWIPVC PNSSLNVSAE YGDQAIKFGL RNKDVLCVQE SACYINDMRM 120 HDFLRACAEH PLEKGQGVAG NAILSNHPFF SSDVREYDMH DYPLAHHARK FGLHAAVAIR 180 LRSTYTGNDD YVLEFFLPLT CKVREEQQLL LDDISMTMQR VCSSLRTVSD AELKENTTTM 240 RSEIRCSSSD VSISSCNQID VSSEVKINVP LENQIKNSVE QLADKKYAKF EPGTTSQNFE 300 NCSSTGKNVS LTLLQESTSD GLKIRSSTEK HVSLKILQQY FAGSLKDAAK SIGVCPTTLK 360 RICRQHGISR WPSRKIKKVN RSLEKIQNVI STVHGVDGVI KYDPATGCIV SSVSHTEEPS 420 MMNVEHRSSD SLPTECRKFQ PDYDAYKREH LGQAVPHKAQ NEKRSETHIN LNPGGLSRNS 480 HFGRTSKGSE CQDASNDSYL TKEMICPGGM EMWVEGAEQK NVLWNSISMP QQCKIEIETD 540 KSNAIVEQSL ASSSSMTDCS SGGTSSDGTL KKCLKSRPVD GSNASIVVKA AYKDDTVRLK 600 LLPSMKYQDL LEEIAKRLKL SVGAFQLKYK DDEDEWVILA SDADLQECLD VLDTTGARIM 660 KVQVRDVPCA TGASSGSSFI SGQ

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

FSVPIQACTH MICKPKAFLI ILIVTFVILQ SVHLSTVRAR THPQSLTRNQ QSVLTEILDV  60
LRAVCHTHML PLALAWIPVC PNSSLNVSAE YGDQAIKFGL RNKDVLCVQE SACYINDMRM  120
HDFLRACAEH PLEKGQGVAG NAILSNHPFF SSDVREYDMH DYPLAHHARK FGLHAAVAIR  180
LRSTYTGNDD YVLEFFLPLT CKVREEQQLL LDDISMTMQR VCSSLRTVSD AELKENTTTM  240
RSEIRCSSSD VSISSCNQID VSSEVKINVP LENQIKNSVE QLADKKYAKF EPGTTSQNFE  300
NCSSTGKNVS LTLLQESTSD GLKIRSSTEK HVSLKILQQY FAGSLKDAAK SIGVCPTTLK  360
RICRQHGISR WPSRKIKKVN RSLEKIQNVI STVHGVDGVI KYDPATGCIV SSVSHTEEPS  420
MMNVEHRSSD SLPTECRKFQ PDYDAYKREH LGQAVPHKAQ NEKRSETHIN LNPGGLSRNS  480
HFGRTSKGSE CQDASNDSYL TKEMICPGGM EMWVEGAEQK NVLWNSISMP QQCKIEIETD  540
KSNAIVEQSL ASSSSMTDCS SGGTSSDGTL KKCLKSRPVD GSNASIVVKA AYKDDTVRLK  600
LLPSMKYQDL LEEIAKRLKL SVGAFQLKYK DDEDEWVILA SDADLQECLD VLDTTGARIM  660
KVQVRDVPCA TGASSGSSFI SGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	1e-110	Nin-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG013280.12