PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG013280.11

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 615aa MW: 68043 Da PI: 6.8053

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG013280.11	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.1e-28	261	311	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ TRIDC4BG013280.11 261 EKHVSLKILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 311 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MLPLALAWIP VCPNSSLNVS AEYGDQAIKF GLRNKDVLCV QESACYINDM RMHDFLRACA 60 EHPLEKGQGV AGNAILSNHP FFSSDVREYD MHDYPLAHHA RKFGLHAAVA IRLRSTYTGN 120 DDYVLEFFLP LTCKVREEQQ LLLDDISMTM QRVCSSLRTV SDAELKENTT TMRSEIRCSS 180 SDVSISSCNQ IDVSSEVKIN VPLENQIKNS VEQLADKKYA KFEPGTTSQN FENCSSTGKN 240 VSLTLLQEST SDGLKIRSST EKHVSLKILQ QYFAGSLKDA AKSIGVCPTT LKRICRQHGI 300 SRWPSRKIKK VNRSLEKIQN VISTVHGVDG VIKYDPATGC IVSSVSHTEE PSMMNVEHRS 360 SDSLPTECRK FQPDYDAYKR EHLGQAVPHK AQNEKRSETH INLNPGGLSR NSHFGRTSKG 420 SECQDASNDS YLTKEMICPG GMEMWVEGAE QKNVLWNSIS MPQQCKIEIE TDKSNAIVEQ 480 SLASSSSMTD CSSGGTSSDG TLKKCLKSRP VDGSNASIVV KAAYKDDTVR LKLLPSMKYQ 540 DLLEEIAKRL KLSVGAFQLK YKDDEDEWVI LASDADLQEC LDVLDTTGAR IMKVQVRDVP 600 CATGASSGSS FISGQ

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MLPLALAWIP VCPNSSLNVS AEYGDQAIKF GLRNKDVLCV QESACYINDM RMHDFLRACA  60
EHPLEKGQGV AGNAILSNHP FFSSDVREYD MHDYPLAHHA RKFGLHAAVA IRLRSTYTGN  120
DDYVLEFFLP LTCKVREEQQ LLLDDISMTM QRVCSSLRTV SDAELKENTT TMRSEIRCSS  180
SDVSISSCNQ IDVSSEVKIN VPLENQIKNS VEQLADKKYA KFEPGTTSQN FENCSSTGKN  240
VSLTLLQEST SDGLKIRSST EKHVSLKILQ QYFAGSLKDA AKSIGVCPTT LKRICRQHGI  300
SRWPSRKIKK VNRSLEKIQN VISTVHGVDG VIKYDPATGC IVSSVSHTEE PSMMNVEHRS  360
SDSLPTECRK FQPDYDAYKR EHLGQAVPHK AQNEKRSETH INLNPGGLSR NSHFGRTSKG  420
SECQDASNDS YLTKEMICPG GMEMWVEGAE QKNVLWNSIS MPQQCKIEIE TDKSNAIVEQ  480
SLASSSSMTD CSSGGTSSDG TLKKCLKSRP VDGSNASIVV KAAYKDDTVR LKLLPSMKYQ  540
DLLEEIAKRL KLSVGAFQLK YKDDEDEWVI LASDADLQEC LDVLDTTGAR IMKVQVRDVP  600
CATGASSGSS FISGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	2e-99	Nin-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG013280.11