PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4BG007110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CO-like | ||||||||
Protein Properties | Length: 416aa MW: 45412.9 Da PI: 6.4533 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24 | 7.8e-08 | 18 | 61 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + + +++++C ++ +lC+ C + H+ H+v TRIDC4BG007110.1 18 ARACDGCMRRRARWHCAADDAYLCQACDASVHSAnplarrhHRV 61 578*****************************668888886655 PP | |||||||
2 | CCT | 66.4 | 8.2e-23 | 346 | 389 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ TRIDC4BG007110.1 346 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 389 9*****************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence |
DLTRSMASAG AAIGARAARA CDGCMRRRAR WHCAADDAYL CQACDASVHS ANPLARRHHR 60 VRLPSSSSPA ATSSLQHADP DEPAWLHGLK RRPRTPRSKP GTVGKHGAPA AAKAAAASAV 120 PDLEAEDSGS GIVGDNDDVH GVEVDDEDLL YRVPVFDPML AELYNPMPVD EFREPLEQKP 180 AVCCFSSLAK QPSSEYASGV AGAADGFTGF DVVPDMELAS FAADMESLLM GGVEEGFDDL 240 RFLDEEKPQL NLDFDMADFD DQSTAAPAPE QESLEDRKRK RSDSGMILKL DYERVIDSWA 300 HDGGSPWFYG ERPHIDPGDD SWLELPAGSR GFGLGAAVTA VTGGEREARV SRYREKRRTR 360 LFAKKIRYEV RKLNAEKRPR MKGRFVKRTA LPPLPPRPPM VLAGHGHGGA HGRFRF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 95 | LKRRPRT |
2 | 357 | 373 | RRTRLFAKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 2e-50 | CO-like family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4BG007110.1 |